RNA id: TU77532


Basic Information

Item Value
RNA id TU77532
length 3491
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G61920
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13789391 ~ 13792931 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCTTTATtaagtattaaattaaatgtcacaggTAAACAGTATAGTAGCATGCTGTGCTGTCTCCCTCATTAGGTCATTAGGATTTAGGGCAATAATATATAAGTGAACTGAGACTTAAACTTGAATTCAGTGGCAAGTTTATACTACATTTAGGCacctaaattaaaacataaaaaactgaaaatctgtaaaactgtaaaacgTAAAACTGTAAAACGTGGAAGGCTGTGAGGAGACAGAATTTCAGTACAAGTACATATGAAATTTTACATATTTGGTAGTAAATATTAAAGGCTAAAgtaagtattaaaaaacaagtcatgtttttgtaattatcaTTGCATATTAATCATAGAATATTGTGCTTGAGCAGGCAATGCTATCATATGGTCTCGACCCATGTGGGAGGGTTTTCACAGGGGAAGAAATCGCACTGGGCTCGGGCTGGTGCAGGGTTCGACAAACAACTGGAGCACAGAGACTAAGGACAGAGGGCAGAGGACATAGGCGGCCCTGGGGTGGTCAGGAGAGCTGATCGGAGTGTAGGGGCACTGCTACACTCCACCAAGGGGGAAGAAAGTAACAGGTAACACCCTCCGACAGTGCATTGAACTGCACaacactacagtatactatgATGCACTTTCATTTGCACTGCATTTCACTGCAAGTACTGTTTGCTGGATTAAAGGCAGGTGCCATAGACCTCGGTGACCAGCAGAGGTCTCCCTTCACAAAGGTTCAGTCACTTCCCCACACTGGCTTAGCCTTGAGTCGTGTGATAGGCAATCTTatgcaatgtgtttatttgcatttaaatgctatatataattgttctatatttatttttaaatttactaaGCACTTTggcatttaatttactgtacaGCTAGAAAAGTCAACTTACTTAAAAGTAATGTCAGTGTCTATATACAATAATTATACTGAGCTATATAAGatgcacataaaaaaacattccagtCGCAGCAAGCACACTCACTGACGGACCCTATCATTTCAGGTgatacaaatcattaaaaaataaattgctggaTAAAGCAACTGTTTTAAGTAGTGGGAGTACAATACTGCCCACTCTCCTCCCCTCTTCTGCTGTCCAGGAACCACCTCTTTCCTACACAGTACAGGCTCTGGTTCtataaaatgtacttatttttctataaaataagtattattattattattattattattattattattattattattattattattattattatattcatatattaatattatattattttaattaataattatatttaatattgccATCCTTAGAGGCTGTTTCATTATGGGGAAGCATGCAGGGCTTTTCCAGTATATGACTATAACAATAAATCATGTCCTAGACCACGATATGAATGAATATGTATAGCTCTATACAGCTGGGCCCCTTACACAGTGTGCATCAGTTGTACaggagtcacacacacacacacacacagagacgggCAGGCAGCCAGGCAGGTGGAGAGACAGACAACTTGTCCTCACTCCTCTGCCCAATGCATCCACTCCACAGGCAGCTCTGAAAATGCCTTCTGTCTGCTGGGACAGGACCTATATACATTAGTAGTTCTGTATGTTGTGGTCTGGATTACAGGGCCCAACCAGCACTCTGCCGAGCACTGTGGCCAGACGAGCCTTCTGGAGCCCATGAAACCATAATCACATAATTATAACTAAGCAGAAAGATTTacgtcttttttatttttcaatattaaggGGAACTAGACTCTCTctaccatctctctctcactgtgagGTGTGACTCTAACAGAAGCCTTCATGGCTCTGCAGATTGATGTGGGAATACAGCCCTGCATCTTCCCAGGTCTGTCCCTGATCTGCTCAGTGTCCAGaagcagaggcagaggcagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagcaccgcCCTGCCACGGGGGTGATATTCTTTTCACTGGCCTGTGTGCTCTGGGGAGTTACCACATTCACTGTGGTGACTGATGTTAGAAAGATGTTAGAACCTGTGTTTGAAAGTCACCTGGTCATTTTCCATACAACTGAgatcactgcacacacacacgcacacgcatgcatGTCTGTGGGgcacactgctctgctcccaATACAGCAGTCTGGAAACATCAGCAACAGAGCAgtataacacacacagatatatttatctatatatatatatatagtgatacAGAGTGGAAGGTCACAGTCTAGACTCTTGCATCAGTGAGGCAACAGTGGAGGGTAGGCtttaaaaagaatgaataaGGATCGAGCGGGTCAGCAAACAGCAAGCCAGTCAGGGCACTGACGAACACTCATTATTCTTTGTAATTGGGGCCGCTTTATGTAATTGGAGTGGACCTGGGTGTATAAATGCACACATGATATCATTCATACAGTATAATCTGTGCATTTATGATGTAAATTCTACTGactcagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagctggtgcAGTCGGAGCTCCCTGTGTCGCACAGATCCTCCTCCGAGCGATCCGCACCGCAGCAGTTCCACCCAGTAGAGCAATAAACCTTGCTACGCCAAAATACCTTGTCTCCTGACTTGGGAGGCTTATCACCGTTCTGATTGacagaggggttacgtcacCTGTAATAAGCTCATACACCTGATGAGCCCCGTTACATGCGCTTGCTGAACTCGGACTAGCAGTCTGCTGTGTGCCCAAGCGTCTAGCTCTCTGCCCTGTTTGTGACAGGTACCCCTTCCTCCGCCCCCTGCAGGTGCCGGCACTGGTCAGAGTCCAGTGAGGTCTACGATAGCCTTGATGAAGATGGTGTCATCCCGCAGGTAAGAGCTCTTGGCGCCACTCAGCTTTGCCAGTGGGCAGAAGAGGGGGCAGCCGCTGGCGATGTTCATCTCGCTGATCGGCCGctggaaggaggaggaggtgacATCAGGCCGGAATGCGTCGATCACATGCTCCCTGTTGTTCTGGTCCAGCAGCATCAGGGTCACCTGCGGGGAGGAGGAgtggggaggagagagatggaaggagacagaaaatgagagaaagtgagggagaggagagggtaaaaggaaaaaagaaagagaaattgattattttcttattcaaaaCTGATTTAAGGTAAACCCCACACTCCATCCCACTCCttttcactgacacactggagATGATGAGAGAAACAGTGCCCCCTACCTTCTGGCTGAATGGCCACTTGAGCAAGGCGTCATTTTTCCCCCTCATCACCACGAAGAACAGGGACAGGTGAGTGCCGCGGCCCGTCCCGTCGCCATTGAGGTACAGTCGCAGGCACATCTTATAGCCATACTTACTGGAATAGAAGGctggaaagggagagagagagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77451 lncRNA downstream 38093 13751084 ~ 13751298 (-) True G61872
TU77364 lncRNA downstream 136012 13578409 ~ 13653379 (-) True G61803
TU77271 lncRNA downstream 339329 13447002 ~ 13450062 (-) True G61729
TU77227 lncRNA downstream 451290 13337016 ~ 13338101 (-) True G61696
TU77095 lncRNA downstream 781725 13007422 ~ 13007666 (-) True G61593
TU77540 lncRNA upstream 19040 13811971 ~ 13813003 (-) False AMCG00020256
TU77542 lncRNA upstream 19040 13811971 ~ 13813003 (-) False AMCG00020256
TU77549 lncRNA upstream 28817 13821748 ~ 13823540 (-) True G61927
TU77551 lncRNA upstream 31758 13824689 ~ 13828265 (-) False AMCG00020249
TU77567 lncRNA upstream 120241 13913172 ~ 13914166 (-) True G61943
AMCG00020234 mRNA downstream 22208 13760414 ~ 13767183 (-) True AMCG00020234
AMCG00020239 mRNA downstream 43958 13737734 ~ 13745433 (-) True AMCG00020239
AMCG00020233 mRNA downstream 58907 13723015 ~ 13730484 (-) True AMCG00020233
AMCG00020238 mRNA downstream 66443 13719430 ~ 13722948 (-) True AMCG00020238
AMCG00020240 mRNA downstream 74200 13711782 ~ 13715191 (-) True AMCG00020240
AMCG00020253 mRNA upstream 266 13793197 ~ 13797273 (-) True AMCG00020253
AMCG00020248 mRNA upstream 7662 13800593 ~ 13804321 (-) True AMCG00020248
AMCG00020252 mRNA upstream 13824 13806755 ~ 13808306 (-) False AMCG00020252
AMCG00020256 mRNA upstream 18482 13811413 ~ 13812141 (-) True AMCG00020256
AMCG00020250 mRNA upstream 21291 13814222 ~ 13820396 (-) True AMCG00020250
TU77394 other downstream 123806 13664087 ~ 13665585 (-) False AMCG00020229
TU77373 other downstream 192474 13595518 ~ 13596917 (-) True AMCG00020230
TU77151 other downstream 564881 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 791168 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 1279454 12500424 ~ 12509937 (-) False AMCG00020180
TU77536 other upstream 12089 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 12089 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 336747 14129678 ~ 14131569 (-) True G62011
TU77709 other upstream 537591 14330522 ~ 14332407 (-) True G62061
TU78130 other upstream 2305969 16098900 ~ 16102739 (-) False AMCG00020316

Expression Profile