RNA id: TU77648


Basic Information

Item Value
RNA id TU77648
length 1123
RNA type TUCP
GC content 0.44
exon number 2
gene id G62011
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14129678 ~ 14131569 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGTTGCTAATGGGAATATTTACAACGCAACACGCACCGGCCTGTTTGAAAGTATGGCGGCGGAGGAGATGGTCGGGCAGACCTGGGTGATTGATAAAGTAGGGCTGCCCAACCGGACGAGCTTAGAAGCAGTGGAGACCCTGTCACTGCAAGGGAGCTGCAGCCAGAAGATCCTGGGCTTCAGAGAAGCTTTCATCACCTGCAGAAGCCTGCGCTGCCTGGACCTCTCCCGCAACGCCATCGTGAGCCTGGAGGCAAGCAGCCGCCGCAGCCGCCGCAGCCGCCTGGGTCCACTGAAACGCTGCAGCAGTGAAGGGTCATTCCATGAAATTAGGATGTCTGTGATCAAATACGAATTACAAATGACTTTTtgtattatggttattattaatgttcttgccaaatttgttttttctttcttaatgttACTTCAAAGCTGTGTTCAATAATGCATGTTTGCTTGTCTATTCCTTATTTGACTAGTAGTTACATGCAGGTCATTTGACTGTCCTGTACAACATATTACAGTTCTCTTAATggtaatgaataaaacaatcaatttcTACCCCCTACTTTGTCTAAATGTAGGTGCTAGACCGTCTTCACAGTGGCAGTGATACTATACAGATTACTATGATTATTTAAGTTGCAAAGAGAAGGAAATCACTACTGGGGTCCCATACAACACACTTGCTATCACCTGAAAGAGCTTTTTGAGTTGAACTGGGGTCTGTGTGTTAATGCTTACCGATTGGCTATGCACAACTTCGTGGCGAGaaggtgctgctgctgctgccaccatCCACAGACCACCTGTAAAGCTCTGACGATCTGTGACTTCAAAAGGATGTTGACAAAAGCTTCAAGGTTTGCAGGAAAACTGGCTCTGCAGCCCTGTTACATCACTCTTGGCACATCTCACCATTGAAAAGacacattattaaatattcagGATTTGGATAGGTTGCTGCTCTCATGTCACACAGGTGCTCCTGTCCTACCTGTCACATATTCACTGATTGacaggatttattttacagtcCATTTAGATCACGATCtatgctatattattatttataggctcCTGATTTATGGAGTTACATTACAGGTTTCTTCAATCCT

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77567 lncRNA downstream 215512 13913172 ~ 13914166 (-) True G61943
TU77551 lncRNA downstream 301413 13824689 ~ 13828265 (-) False AMCG00020249
TU77549 lncRNA downstream 306138 13821748 ~ 13823540 (-) True G61927
TU77540 lncRNA downstream 316675 13811971 ~ 13813003 (-) False AMCG00020256
TU77542 lncRNA downstream 316675 13811971 ~ 13813003 (-) False AMCG00020256
TU77717 lncRNA upstream 213728 14345297 ~ 14401302 (-) False G62066
TU77716 lncRNA upstream 221921 14353490 ~ 14401302 (-) True G62066
TU77815 lncRNA upstream 571942 14703511 ~ 14767563 (-) True G62143
TU77869 lncRNA upstream 900566 15032135 ~ 15034076 (-) True G62191
TU77990 lncRNA upstream 1291586 15423155 ~ 15423574 (-) True G62283
AMCG00020261 mRNA downstream 239147 13886384 ~ 13890531 (-) True AMCG00020261
AMCG00020251 mRNA downstream 247489 13877282 ~ 13882189 (-) True AMCG00020251
AMCG00020254 mRNA downstream 277209 13850330 ~ 13852469 (-) True AMCG00020254
AMCG00020257 mRNA downstream 280594 13848344 ~ 13849084 (-) True AMCG00020257
AMCG00020258 mRNA downstream 291460 13837802 ~ 13838218 (-) True AMCG00020258
AMCG00020270 mRNA upstream 6843 14138412 ~ 14145684 (-) True AMCG00020270
AMCG00020269 mRNA upstream 17005 14148574 ~ 14169641 (-) True AMCG00020269
AMCG00020274 mRNA upstream 110296 14241865 ~ 14249749 (-) True AMCG00020274
AMCG00020278 mRNA upstream 180843 14312412 ~ 14314001 (-) True AMCG00020278
AMCG00020282 mRNA upstream 274214 14405783 ~ 14427264 (-) True AMCG00020282
TU77536 other downstream 321345 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other downstream 321345 13805020 ~ 13808333 (-) False AMCG00020252
TU77394 other downstream 464093 13664087 ~ 13665585 (-) False AMCG00020229
TU77373 other downstream 532761 13595518 ~ 13596917 (-) True AMCG00020230
TU77151 other downstream 905168 13221600 ~ 13224510 (-) True AMCG00020212
TU77709 other upstream 198953 14330522 ~ 14332407 (-) True G62061
TU78130 other upstream 1967331 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other upstream 1967331 16098900 ~ 16102739 (-) True AMCG00020316
TU78145 other upstream 1987420 16118989 ~ 16120153 (-) True G62409
TU78153 other upstream 2121219 16252788 ~ 16255119 (-) True G62415

Expression Profile