RNA id: TU77650



Basic Information


Item Value
RNA id TU77650
length 517
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G62013
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14136420 ~ 14136936 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGGAGGCAGGTCACTGCTGGTCTGTAGTGTCTGCactgtctgtcagtgtcagcGGCTGCCATCTGAGGAGTTGGTTCTTTGAAGTTCTTTGCATCTGTTTTTGCATCCATGAAAGTGTCAGGCGGGGCGTGACGGGGAATATATCACTTAACTGatcaattattatattattctttcactatttatttagatgtgtgcacttattCTTTCTATGATCACGGTTGTCTCATGTTTTTTGCttccttattttgttgtatcacctttctttttgtataattggtttattgggtttagattgatttgttgtttttcttgtcaagCGCACGCCACCAgcccacattctcacctggacccACCTGCACCCCTGGCTCTGTTTCAGTATTTAAGCTGAGAGACTGAGTCATTTGGGTTGCAAAACTGAGCAAGAGACACCACTACTGGACAAGTAGTATGGATGAGCAAGGAGAGGGCAAGCCAGGGCTGGAGAGGGGGAATGTGGAAACTATTGCAGAAACAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77649 lncRNA upstream 133 14135298 ~ 14136287 (+) True G62012
TU77505 lncRNA upstream 205680 13877311 ~ 13930740 (+) True G61904
TU77495 lncRNA upstream 245992 13888151 ~ 13890428 (+) True G61895
TU77507 lncRNA upstream 251304 13882825 ~ 13885116 (+) True AMCG00020241
TU77473 lncRNA upstream 343476 13789762 ~ 13792944 (+) True AMCG00020245
TU77651 lncRNA downstream 490 14137426 ~ 14137829 (+) True G62014
TU77670 lncRNA downstream 58848 14195784 ~ 14218381 (+) False AMCG00020273
TU77683 lncRNA downstream 104929 14241865 ~ 14288834 (+) True G62039
TU77711 lncRNA downstream 208360 14345296 ~ 14401302 (+) True G62062
TU77769 lncRNA downstream 417920 14554856 ~ 14621700 (+) True G62108
AMCG00020268 mRNA upstream 37771 14085133 ~ 14098649 (+) True AMCG00020268
AMCG00020266 mRNA upstream 80690 14052358 ~ 14055730 (+) True AMCG00020266
AMCG00020263 mRNA upstream 114093 14000227 ~ 14022327 (+) True AMCG00020263
AMCG00020264 mRNA upstream 141281 13988080 ~ 13995139 (+) True AMCG00020264
AMCG00020262 mRNA upstream 160861 13973414 ~ 13975559 (+) True AMCG00020262
AMCG00020273 mRNA downstream 69271 14206207 ~ 14232268 (+) True AMCG00020273
AMCG00020271 mRNA downstream 120636 14257572 ~ 14259160 (+) True AMCG00020271
AMCG00020272 mRNA downstream 125046 14261982 ~ 14272204 (+) True AMCG00020272
AMCG00020277 mRNA downstream 157797 14294733 ~ 14302999 (+) True AMCG00020277
AMCG00020275 mRNA downstream 177456 14314392 ~ 14332409 (+) True AMCG00020275
TU77582 other upstream 185373 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 269857 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 301588 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 785708 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1516603 12615792 ~ 12619817 (+) True G61491
TU77751 other downstream 330864 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 2677438 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 3322224 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 3791392 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 3921622 18058558 ~ 18061864 (+) True AMCG00020408

Expression Profile