RNA id: TU77683


Basic Information

Item Value
RNA id TU77683
length 1305
lncRNA type read_through
GC content 0.40
exon number 2
gene id G62039
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14241865 ~ 14288834 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGCATGATGAAATTAAGTTACATATTTATTGTCACATTGAAGAGGAACACAATATTCACAAAATAGGAAACAAGATCAAGTGTTCGACGGTAGGCCTTCACACAAATATGTACATCACAAGGCAGGTCTTAAAAAGTGtcggacatttttttttaaatttatatatatatatgtatacagagagagagagagagaaatagatagttttaaagttaaatatgataatacaatttaatccgttcaattaaataaagttcTATTATAGAATTATTTTCTAGGAATATCTTGGTCTTCACAAGGGGGAGGGACACAATTTACCTGCAACCAGAGGCAGGCCCTGCTCAGCCAGACAGGTATCCTGACCGCATACGGCAAAACACTCACTAAGGGGCCATTCCACTACAGTCACGACAGCTGAAGCCTGCCATTGCTCTGACCACCgcaaaacaacatatttatcagatacctttatttaaaagtaaagttGTAATTGGTCTTGAAGCCGCTGTCAAAATAAGGTCATAACAAAAGTCTCAGCTTAAAACTAAAGGACAGTATCAGAAAGCTAATGGTAATACAGCAATGATGCActaaagttgtttttcttttgtctgtgtttttttgacgattcaaaaaaacatttgattttctaTCCTTTACACTGGTACCTGCATCAAAGATTCCTTGATACACAGACTTGCGGAGAGTGCTTTCAATGCTTTCACAGTTGACAATCTAAAAAATGatcataatttatatatattttttaaagtccaCTTTACTCATTCAATGCCATAAAGGAAGCTACACTAAATTGCCAGcagcaaataaaacacaaaagaaacagaatgaAGCATAATTTCAACATGGAATGTAGTAGTGTTTCTGACATGTGTAAAAGAAACGGGTCAGAGTTTCTTgtttgataaataataaaaaaagacatcaaCAGAGCTGGTGTTCCCAGTAGGGCAGAGAGGAGGCATGCCAGACCATGAAGGGCAAAGACAGGACTTCACACTCTGGTCCCTGCTAGCTGCGCCACACTCCTCATCGGCTGAGACCAGCCAGGATTTCCACACTGTTGTGCAATAACGCACTATCCtcagtgtgttgtgctgtgtaaTATCACACTGTCCTCTCAGTGTGTCTAGACCTCAGTCCTGCTGGGACTGAATGAAGCCCTTAAAGAATGGTGCTAAGCAGGTGTACAAGTGGGTCAGTGCTCGAGGGGGTGTGTGGACCCAGCCCTCCCTCAGACACTCAAGTGCCTTGCTTTACAGgagccactgtgtgtgtgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77670 lncRNA upstream 23484 14195784 ~ 14218381 (+) False AMCG00020273
TU77651 lncRNA upstream 104036 14137426 ~ 14137829 (+) True G62014
TU77650 lncRNA upstream 104929 14136420 ~ 14136936 (+) True G62013
TU77649 lncRNA upstream 105578 14135298 ~ 14136287 (+) True G62012
TU77495 lncRNA upstream 351437 13888151 ~ 13890428 (+) True G61895
TU77711 lncRNA downstream 56462 14345296 ~ 14401302 (+) True G62062
TU77769 lncRNA downstream 266022 14554856 ~ 14621700 (+) True G62108
TU77775 lncRNA downstream 277885 14566719 ~ 14567438 (+) True G62114
TU77779 lncRNA downstream 288673 14577507 ~ 14578702 (+) True G62118
TU77862 lncRNA downstream 743208 15032042 ~ 15034083 (+) True G62185
AMCG00020273 mRNA upstream 9597 14206207 ~ 14232268 (+) True AMCG00020273
AMCG00020268 mRNA upstream 143216 14085133 ~ 14098649 (+) True AMCG00020268
AMCG00020266 mRNA upstream 186135 14052358 ~ 14055730 (+) True AMCG00020266
AMCG00020263 mRNA upstream 219538 14000227 ~ 14022327 (+) True AMCG00020263
AMCG00020264 mRNA upstream 246726 13988080 ~ 13995139 (+) True AMCG00020264
AMCG00020277 mRNA downstream 5899 14294733 ~ 14302999 (+) True AMCG00020277
AMCG00020275 mRNA downstream 25558 14314392 ~ 14332409 (+) True AMCG00020275
AMCG00020276 mRNA downstream 51001 14339835 ~ 14383230 (+) True AMCG00020276
AMCG00020279 mRNA downstream 150244 14439078 ~ 14450651 (+) True AMCG00020279
AMCG00020280 mRNA downstream 162941 14451775 ~ 14461301 (+) True AMCG00020280
TU77582 other upstream 290818 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 375302 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 407033 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 891153 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1622048 12615792 ~ 12619817 (+) True G61491
TU77751 other downstream 178966 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 2525540 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 3170326 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 3639494 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 3769724 18058558 ~ 18061864 (+) True AMCG00020408

Expression Profile