RNA id: TU77709


Basic Information

Item Value
RNA id TU77709
length 1786
RNA type TUCP
GC content 0.45
exon number 2
gene id G62061
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14330522 ~ 14332407 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAAAGAAAAGTAAGTGTTTATTTGCAATTGTAAAACTTTTACAGCTCTTCACCCTACCCAAAGCTGAAGTAAAGACATATGGATATCTTACTGCTGAATGCCAACCTATTGTGAGTTTCCTTTTCAACTGCCAGTGTCAGACTGAGTCACACATACTCTcatttcacaatgttttaatcTCGTCCATAGGAAGGCCTAGGAGTTCACCCCCAATATAGAAAGGGTGTCCCGCATTTGGGCCTAGCTGATCCACATGTCACTCACTGGGCAGCATTGTGTCCCACGGTATCCCGGTCCATCCAGAACGCACCGCCCTGGCACTTAAAGTTCAGGCATTCatataaacacagcacaaacactGCAGGAGAAAATAACTATTGTGCCATTGGGATGAACgacagaaaaaacagaactaGTATTGCCTCGGATCAATATAATgggttttaataataataaactgtacaaATCTGGagttataaattacataaacagGACAGAGGCTTTGTAGTGAATTTATAAAAACTCCTGGCGATTTGTCATCTGATAAATCAGTGAGGGATGTGTCTGCACTGCCACCTGGTGTTCACATGTAGAAATAAACTAATTCTAACCCTACCTAACTCTGGTAGTCTTATATCAGCAGCACTCCACACACAGCAATACAGAAAATCAGCAAGAGAGCGCGACATCCCTGGGTAAAGTCAaccaatcaatccatttttatttggtatagcacCCTTTGCAATGTTGTCAAAAAACGCTTCACTAATCAAAGCACCTACACAACATTGCGATCACATATAATCTCAAAATAAACCATCAGGTAGagaagagaggaaaacaaacttCTATAGGATGATAGACTGTTAAgaggtgaaaataaatatctggtttatttataatcattaaTAAAGTAGCTTCTTATAAGTAGTTCCCCACCAGTAAAGGTTTCCttctccttttaaaaacacacgATGCAGATGAAACCTCAGGGACGATACTCTTTTAATGCTGAACATGCTGTTAAAAGACCTCAGTAGCTGTACGCTTGACAAAGCAGGCCCCTGACAGTACGGCTCATATCTTTAATAATGTAAAGGTCATGCACACCGTTCAGAAACTGAGAGTGTATAACGTTCCAGAGAGAGACCAGGAATAATGGCATTGTAGGCCACTGGATCTGACCCGCCCCGCCCAGTATAAACTCCCTTCTTTAAATACTACAACCCCAGTCTACCGTCCTTAGAAGAAAAAGtgtcaaatgtttaatttatctAAAATAGAGAGTCTTTATTAAATCAGGAAGCGATCAGAAACCCAGCTGTGGATGAGAGGCTGCTGGAGTGGCAGGGGCAGCGAGAAAAGGGGAGGTCATCCCAGGTGTGTGTGACCTGGCGCCCCCACCCTGCAGACAGCCCACCGCCACAACAGCATTGAGTTTAAtaatggcaattaaaaaaaataaaagtatagaaTCATGAAGAGGGTACAGAGCAGGACAGAGCGCCCCCTGCAGTCTGGCGTCCTGCATGAAGGTAGCAGCGAGAGTGAGGGGTGGTTGGGGTTCCTGTCCTGCAGTCCATTGGTTCAGCTCTCCCCGGGGGTGTCGGGGTGCTATGTTTCCCTGGTGGCATCTGCTGGATCGTTGCCACCATTGCActcgccctcctcctccctcctcctcttcttgaCCAAGCCGCTCTCCTGCTCCCCCAGCCGCCCCTCCGGCAGGCCCAGACTGCGCAGACACACAATGGCCGCTGCCTGCTCTGCCAGCTTCTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77567 lncRNA downstream 416356 13913172 ~ 13914166 (-) True G61943
TU77551 lncRNA downstream 502257 13824689 ~ 13828265 (-) False AMCG00020249
TU77549 lncRNA downstream 506982 13821748 ~ 13823540 (-) True G61927
TU77540 lncRNA downstream 517519 13811971 ~ 13813003 (-) False AMCG00020256
TU77717 lncRNA upstream 12890 14345297 ~ 14401302 (-) False G62066
TU77716 lncRNA upstream 21083 14353490 ~ 14401302 (-) True G62066
TU77815 lncRNA upstream 371104 14703511 ~ 14767563 (-) True G62143
TU77869 lncRNA upstream 699728 15032135 ~ 15034076 (-) True G62191
TU77990 lncRNA upstream 1090748 15423155 ~ 15423574 (-) True G62283
AMCG00020278 mRNA downstream 16521 14312412 ~ 14314001 (-) True AMCG00020278
AMCG00020274 mRNA downstream 80773 14241865 ~ 14249749 (-) True AMCG00020274
AMCG00020269 mRNA downstream 160881 14148574 ~ 14169641 (-) True AMCG00020269
AMCG00020270 mRNA downstream 184838 14138412 ~ 14145684 (-) True AMCG00020270
AMCG00020261 mRNA downstream 439991 13886384 ~ 13890531 (-) True AMCG00020261
AMCG00020282 mRNA upstream 73376 14405783 ~ 14427264 (-) True AMCG00020282
AMCG00020283 mRNA upstream 104389 14436796 ~ 14437815 (-) True AMCG00020283
AMCG00020284 mRNA upstream 107124 14439531 ~ 14440544 (-) True AMCG00020284
AMCG00020285 mRNA upstream 130006 14462413 ~ 14484977 (-) True AMCG00020285
AMCG00020288 mRNA upstream 164827 14497234 ~ 14545943 (-) True AMCG00020288
TU77648 other downstream 198953 14129678 ~ 14131569 (-) True G62011
TU77536 other downstream 522189 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other downstream 522189 13805020 ~ 13808333 (-) False AMCG00020252
TU77394 other downstream 664937 13664087 ~ 13665585 (-) False AMCG00020229
TU77373 other downstream 733605 13595518 ~ 13596917 (-) True AMCG00020230
TU78130 other upstream 1766493 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other upstream 1766493 16098900 ~ 16102739 (-) True AMCG00020316
TU78145 other upstream 1786582 16118989 ~ 16120153 (-) True G62409
TU78153 other upstream 1920381 16252788 ~ 16255119 (-) True G62415
TU78161 other upstream 1940044 16272451 ~ 16275573 (-) True G62421

Expression Profile