RNA id: TU77769



Basic Information


Item Value
RNA id TU77769
length 380
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G62108
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14554856 ~ 14621700 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caaaaacatatatttcaataagaTTTATTTAATCACTGAATACAAATGCGGAAaccattttaagaaaaacaaataaaataattttaaaaaacacacacagccctctATCCTTAAttgcatgatacattttttatcaCAGCTCAGgcttaaattcattttttgcGCTTAGATATAAAGACACAAATAGATAATGTCAGCGGCTTCTCTCTCTGGTCAGTCGTCTTTCTTGTCCGACGCGCTGTCGTCCTGTCCGCTCTCAGGGCTCACTCTATTGGTGGGCGGCTCAGGCCCTGGCCCCCCACCCTGCAGGGCCTGGTAGCGCTGCATGTCCAGGTAGGTGGTGAAGAGCTTGGCGTACTCGGGGTGGAAATGCAGCGCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77711 lncRNA upstream 153554 14345296 ~ 14401302 (+) True G62062
TU77683 lncRNA upstream 266022 14241865 ~ 14288834 (+) True G62039
TU77670 lncRNA upstream 336475 14195784 ~ 14218381 (+) False AMCG00020273
TU77651 lncRNA upstream 417027 14137426 ~ 14137829 (+) True G62014
TU77650 lncRNA upstream 417920 14136420 ~ 14136936 (+) True G62013
TU77862 lncRNA downstream 410342 15032042 ~ 15034083 (+) True G62185
TU77943 lncRNA downstream 676047 15297747 ~ 15298181 (+) True G62251
TU77981 lncRNA downstream 711984 15333684 ~ 15335056 (+) True G62275
TU77989 lncRNA downstream 801507 15423207 ~ 15423573 (+) True G62282
TU78095 lncRNA downstream 1442395 16064095 ~ 16066816 (+) True G62368
AMCG00020281 mRNA upstream 82311 14467852 ~ 14472545 (+) False AMCG00020281
AMCG00020280 mRNA upstream 93555 14451775 ~ 14461301 (+) True AMCG00020280
AMCG00020279 mRNA upstream 104205 14439078 ~ 14450651 (+) True AMCG00020279
AMCG00020276 mRNA upstream 171626 14339835 ~ 14383230 (+) True AMCG00020276
AMCG00020275 mRNA upstream 222447 14314392 ~ 14332409 (+) True AMCG00020275
AMCG00020292 mRNA downstream 367330 14989030 ~ 14990430 (+) True AMCG00020292
AMCG00020291 mRNA downstream 369008 14990708 ~ 14991451 (+) True AMCG00020291
AMCG00020298 mRNA downstream 538897 15160597 ~ 15165994 (+) True AMCG00020298
AMCG00020296 mRNA downstream 544314 15166014 ~ 15199292 (+) True AMCG00020296
AMCG00020295 mRNA downstream 590390 15212090 ~ 15218030 (+) True AMCG00020295
TU77751 other upstream 85556 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 603809 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 688293 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 720024 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 1204144 13349677 ~ 13350712 (+) True G61675
TU78405 other downstream 2192674 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 2837460 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 3306628 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 3436858 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 3446087 18067787 ~ 18072043 (+) True AMCG00020407

Expression Profile