RNA id: TU77779



Basic Information


Item Value
RNA id TU77779
length 493
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G62118
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14577507 ~ 14578702 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGAAAAGGGAATGAACTCGCGAATGCATCTAAACCTGAATCCGGCGACTGCCTACCTGTACGTGACGCCGTTCTTCTCCCACTTTGGCCTCCGAGGAAAGAAGTTGTAATTGGCCACGTCTGGGACGCCACAGCGAGGCTTCTTCATCACCTCCAGGGTTTTCTGGTCGATCTCTCCGGTCTCCGGCAGCGAGAAAAACTTCTGCATTTTCTTCAGGGTGTCTTTGAGCATCATGAGGTTGCATCTGTTCTTGGGCTTGAGTCATCCCCAGGGAACTTGATGATGGGCGAAGGCGCAGCAAAAGTTTGCTGAAAAGCAATgaactgaaggaaaaacacTTTCAGGAGAAGGTGTCCGGAGTCCATCTCTGCAGTGTCTGTCCTTCCTTCTGCTTGTCTGGGTATCCGAGTCTGGTGTTGCCGTCTGCCACTGCGGTGTCTCCGGCTATGCTATTTTTTCTTATCTGCACATCCTGCCTGCATGCGAGATTGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77775 lncRNA upstream 10069 14566719 ~ 14567438 (+) True G62114
TU77711 lncRNA upstream 176205 14345296 ~ 14401302 (+) True G62062
TU77683 lncRNA upstream 288673 14241865 ~ 14288834 (+) True G62039
TU77670 lncRNA upstream 359126 14195784 ~ 14218381 (+) False AMCG00020273
TU77651 lncRNA upstream 439678 14137426 ~ 14137829 (+) True G62014
TU77862 lncRNA downstream 453340 15032042 ~ 15034083 (+) True G62185
TU77943 lncRNA downstream 719045 15297747 ~ 15298181 (+) True G62251
TU77981 lncRNA downstream 754982 15333684 ~ 15335056 (+) True G62275
TU77989 lncRNA downstream 844505 15423207 ~ 15423573 (+) True G62282
TU78095 lncRNA downstream 1485393 16064095 ~ 16066816 (+) True G62368
AMCG00020281 mRNA upstream 104962 14467852 ~ 14472545 (+) False AMCG00020281
AMCG00020280 mRNA upstream 116206 14451775 ~ 14461301 (+) True AMCG00020280
AMCG00020279 mRNA upstream 126856 14439078 ~ 14450651 (+) True AMCG00020279
AMCG00020276 mRNA upstream 194277 14339835 ~ 14383230 (+) True AMCG00020276
AMCG00020275 mRNA upstream 245098 14314392 ~ 14332409 (+) True AMCG00020275
AMCG00020292 mRNA downstream 410328 14989030 ~ 14990430 (+) True AMCG00020292
AMCG00020291 mRNA downstream 412006 14990708 ~ 14991451 (+) True AMCG00020291
AMCG00020298 mRNA downstream 581895 15160597 ~ 15165994 (+) True AMCG00020298
AMCG00020296 mRNA downstream 587312 15166014 ~ 15199292 (+) True AMCG00020296
AMCG00020295 mRNA downstream 633388 15212090 ~ 15218030 (+) True AMCG00020295
TU77751 other upstream 108207 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 626460 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 710944 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 742675 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 1226795 13349677 ~ 13350712 (+) True G61675
TU78405 other downstream 2235672 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 2880458 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 3349626 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 3479856 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 3489085 18067787 ~ 18072043 (+) True AMCG00020407

Expression Profile