RNA id: TU77862


Basic Information

Item Value
RNA id TU77862
length 1874
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G62185
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 15032042 ~ 15034083 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctaaaactgtaaaaaaaataagaaaaaacacaaactggaaATGACAGCAGAGATTTggctttattataataattttaaatgatgatCATGATGTTGACAGTATTGGTTTCATAAACATTCAGCTAAAATCCCACCACTCCTTGATTCATAAtgtttacaaattacataaaaaaaaaaaaaacagcaatacaaaaaaatacattcattaaaaaaaatcacaaatgccTCAAGTACAACACCAAAAAACACAGTTGAAAAGCCattcaaaatgacaaaacagatGTAATTATGAAAAGCATGTGTTCTGCATTGGATTTCGTCTACACTGTGGAGATAAGGTTGACTCTTATCACTGTTACACACTGGAAAGAGGTTGCAAGTTTCCCCCGCGAGCACAAACACCTCCCCACATCACCGCTGGCTCATACTCCTGAACACATGCAAGGCGGTGATAGCCACCTAACAGCACAGAAATTAGGGCATtaatcactaaataaataaatgaagcaaaGACCGCAGCCCACAGGTGATAGTTGCACTCCAGAAAGAACGCTCCTCCACATCATGAAAAGCACAGCCTTCTCTGATTAACCTGCTCAGCATGTATGGTTCCCAGCATTGTCTGTCTGAAATTAAACTTTACAAATACATGACATGTCCACACCAACCCAGAATCCACCTCGGCTATGGATCATCTTCTGatttagcttttaaaaacatCCCTTCCATATGAACATAGAATGCAATGAGTCGTTTTATCGTATAGACTGAGAACACTGTGGTATCAAAACTCTGATCGGCCACAGAAAACACTTGATTAAAAATACCTTAGATTTAACGAAGTAGAATTAAAAGTACAACAATGTTTAAAAGGTTGATTATGCTTGCATCACGAGGATTAACCAATGGATAGAACATGACATGGATTTTACGACATTGTGAAGTAATCGTGCCAGGTGACCgtgggttttattttcatgatttcatCTGAAggggataaaacaaacaaacaatgcacTACTTGTACCGCCATTCGTTACTCAACTGCTTATCCACAAACTAAACTCGCAGATCTGGCTCAaggtaaaaaaattaaataaagaagtgctgtgtttgtgttggccTCCATCGCCACAGCCGTGTCCCCGTTGATGGATACTGTCTAAAGGCAAGTGGCGACAGACGATCAGATCCCTATCTTCAGTAATCCATTTAGGCTGACACACGTGCTGCAGGAAACTATTTCACAGCCATTCTTCAAAgcctgatgaaaacaaaatatacacaaagtCACCACCTTCTTCAATTTGAAACTAATCAGAGTTTGCTTAGTATTGCCAAGTAATTTATGCCTGCGCTGCGAGAGGAGAACCTGACCTAGGGTCTCCCTGCACTtagaggcagaggaggaagagcacagagagagagagaacatccATTAcgacaaatgaaaaaaaaaaagagtgcagAAAGATGGTGTTTGTACAGAGGCCAAACTCTAACGGCTCTGATAATTAAACCATATTTATGTGCAAGGGAAAGAACTATTGACCAGACAGACACCATTTATCAAAACTGGGGATCATAAAAATATAGAGGTCTCTGTGCTCAGACATTTGGCCAGCTGTCCAAGTTCTCTTCTCGGGGGCTTGGCAGCGGACAGCCGTGATGTAGGAACTCAAGAGCGGCCACAAATTCCCACACATCAGCAAGACCCCTGGGTCTCACAGAAGACTCTCCAGAGTTTGTATGATGGTCTTCAGGTCAAAAGGAAGAGGCAGAGAAGGGTCATGGTCACGCCAGTAAGGGTGAAACATGGGAGCTTCGTCAGCGGGCAACGTCTGGGCAAGTCTGGACTGGCACCTAGAGAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77769 lncRNA upstream 410342 14554856 ~ 14621700 (+) True G62108
TU77779 lncRNA upstream 453340 14577507 ~ 14578702 (+) True G62118
TU77775 lncRNA upstream 464604 14566719 ~ 14567438 (+) True G62114
TU77711 lncRNA upstream 630740 14345296 ~ 14401302 (+) True G62062
TU77683 lncRNA upstream 743208 14241865 ~ 14288834 (+) True G62039
TU77943 lncRNA downstream 263664 15297747 ~ 15298181 (+) True G62251
TU77981 lncRNA downstream 299601 15333684 ~ 15335056 (+) True G62275
TU77989 lncRNA downstream 389124 15423207 ~ 15423573 (+) True G62282
TU78095 lncRNA downstream 1030012 16064095 ~ 16066816 (+) True G62368
TU78128 lncRNA downstream 1064903 16098986 ~ 16100810 (+) True G62398
AMCG00020291 mRNA upstream 40591 14990708 ~ 14991451 (+) True AMCG00020291
AMCG00020292 mRNA upstream 41612 14989030 ~ 14990430 (+) True AMCG00020292
AMCG00020281 mRNA upstream 559497 14467852 ~ 14472545 (+) False AMCG00020281
AMCG00020280 mRNA upstream 570741 14451775 ~ 14461301 (+) True AMCG00020280
AMCG00020279 mRNA upstream 581391 14439078 ~ 14450651 (+) True AMCG00020279
AMCG00020298 mRNA downstream 126514 15160597 ~ 15165994 (+) True AMCG00020298
AMCG00020296 mRNA downstream 131931 15166014 ~ 15199292 (+) True AMCG00020296
AMCG00020295 mRNA downstream 178007 15212090 ~ 15218030 (+) True AMCG00020295
AMCG00020297 mRNA downstream 201600 15235683 ~ 15244984 (+) True AMCG00020297
AMCG00020299 mRNA downstream 210939 15245022 ~ 15247620 (+) True AMCG00020299
TU77751 other upstream 562742 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 1080995 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 1165479 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 1197210 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 1681330 13349677 ~ 13350712 (+) True G61675
TU78405 other downstream 1780291 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 2425077 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 2894245 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 3024475 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 3033704 18067787 ~ 18072043 (+) True AMCG00020407

Expression Profile