RNA id: TU77869


Basic Information

Item Value
RNA id TU77869
length 1321
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G62191
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 15032135 ~ 15034076 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAGGTGCCAGTCCAGACTTGCCCAGACGTTGCCCGCTGACGAAGCTCCCATGTTTCACCCTTACTGGCGTGACCATGACCCTTCTCTGCCTCTTCCTTTTGACCTGAAGACCATCATACAAACTCTGGAGAGTCTTCTGTGAGACCCAGgcTTTGAAGAATGGCTGTGAAATAGTTTCCTGCAGCACGTGTGTCAGCCTAAATGGATTACTGAAGATAGGGATCTGATCGTCTGTCGCCACTTGCCTTTAGACAGTATCCATCAACGGGGACACGGCTGTGGCGATGGAggccaacacaaacacagcacttctttatttaatttttttacctTGAGCCAGATCTGCGAGTTTAGTTTGTGGATAAGCAGTTGAGTAACGAATGGCGGTACAAGTAgtgcattgtttgtttgttttatccccTTCAGatgaaatcatgaaaataaaacccacGGTCACCTGGCACGATTACTTCACAATGTCGTAAAATCCATGTCATGTTCTATCCATTGGTTAATCCTCGTGATGCAAGCATAATCAACCTTTTAAACATTGTTGTACTTTTAATTCTACTTCGTTAAATCTAAGGTATTTTTAATCAAGTGTTTTCTGTGGCCGATCAGAGTTTTGATACCACAGTGTTCTCAGTCTATACGATAAAACGACTCATTGCATTCTATGTTCATATGGAAGGGatgtttttaaaagctaaatCAGAAGATGATCCATAGCCGAGGTGGATTCTGGGTTGGTGTGGACATGTCATGTATTTGTAAAGTTTAATTTCAGACAGACAATGCTGGGAACCATACATGCTGAGCAGGTTAATCAGAGAAGGCTGTGCTTTTCATGATGTGGAGGAGCGTTCTTTCTGGAGTGCAACTATCACCTGTGGGCTGCGGTCtttgcttcatttatttatttagtgattaATGCCCTAATTTCTGTGCTGTTAGGTGGCTATCACCGCCTTGCATGTGTTCAGGAGTATGAGCCAGCGGTGATGTGGGGAGGTGTTTGTGCTCGCGGGGGAAACTTGCAACCTCTTTCCAGTGTGTAACAGTGATAAGAGTCAACCTTATCTCCACAGTGTAGACGAAATCCAATGCAGAACACATGCTTTTCATAATTACatctgttttgtcattttgaatGGCTTTTCAACTGTGTTTTTTGGTGTTGTACTTGAggcatttgtgattttttttaatgaatgtatttttttgtattgctgttttttttttttttatgtaatttgtaaacaTTATGAATCAAGGAGTGGTGGGATTTTAGCTGAATGTTTATGAAACCAATACTGTCAA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77815 lncRNA downstream 264572 14703511 ~ 14767563 (-) True G62143
TU77717 lncRNA downstream 630833 14345297 ~ 14401302 (-) False G62066
TU77716 lncRNA downstream 630833 14353490 ~ 14401302 (-) True G62066
TU77567 lncRNA downstream 1117969 13913172 ~ 13914166 (-) True G61943
TU77551 lncRNA downstream 1203870 13824689 ~ 13828265 (-) False AMCG00020249
TU77990 lncRNA upstream 389079 15423155 ~ 15423574 (-) True G62283
TU78228 lncRNA upstream 1446454 16480530 ~ 16480990 (-) True G62475
TU78317 lncRNA upstream 1582247 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA upstream 1582318 16616394 ~ 16617421 (-) False AMCG00020336
TU78319 lncRNA upstream 1582318 16616394 ~ 16617579 (-) False AMCG00020336
AMCG00020290 mRNA downstream 256927 14770984 ~ 14775208 (-) True AMCG00020290
AMCG00020289 mRNA downstream 392766 14634566 ~ 14639369 (-) True AMCG00020289
AMCG00020286 mRNA downstream 453297 14564774 ~ 14578838 (-) True AMCG00020286
AMCG00020287 mRNA downstream 467494 14554864 ~ 14564641 (-) True AMCG00020287
AMCG00020288 mRNA downstream 486192 14497234 ~ 14545943 (-) True AMCG00020288
AMCG00020294 mRNA upstream 80831 15114907 ~ 15128403 (-) True AMCG00020294
AMCG00020293 mRNA upstream 96583 15130659 ~ 15145083 (-) True AMCG00020293
AMCG00020300 mRNA upstream 212197 15246273 ~ 15265762 (-) True AMCG00020300
AMCG00020302 mRNA upstream 234993 15269069 ~ 15269426 (-) True AMCG00020302
AMCG00020301 mRNA upstream 236717 15270793 ~ 15307496 (-) True AMCG00020301
TU77709 other downstream 699728 14330522 ~ 14332407 (-) True G62061
TU77648 other downstream 900566 14129678 ~ 14131569 (-) True G62011
TU77536 other downstream 1223802 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other downstream 1223802 13805020 ~ 13808333 (-) False AMCG00020252
TU77394 other downstream 1366550 13664087 ~ 13665585 (-) False AMCG00020229
TU78130 other upstream 1064824 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other upstream 1064824 16098900 ~ 16102739 (-) True AMCG00020316
TU78145 other upstream 1084913 16118989 ~ 16120153 (-) True G62409
TU78153 other upstream 1218712 16252788 ~ 16255119 (-) True G62415
TU78161 other upstream 1238375 16272451 ~ 16275573 (-) True G62421

Expression Profile