RNA id: TU77989



Basic Information


Item Value
RNA id TU77989
length 367
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G62282
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 15423207 ~ 15423573 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctacacaaggctggaatgggctacaagaccatcgccaagcagcttggtgagaaggtgacaacagttggtgcgattattcacaaatggaagaaacacaaaataactgtcagtctgcctcggtctggggctccatgctaGATCTCACCTcatggagtttcaatgatcatgagaacggtgaggaatcagcccagaactacacaggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacacactatgccgtgaaggactgaagtCCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77981 lncRNA upstream 88151 15333684 ~ 15335056 (+) True G62275
TU77943 lncRNA upstream 125026 15297747 ~ 15298181 (+) True G62251
TU77862 lncRNA upstream 389124 15032042 ~ 15034083 (+) True G62185
TU77769 lncRNA upstream 801507 14554856 ~ 14621700 (+) True G62108
TU78095 lncRNA downstream 640522 16064095 ~ 16066816 (+) True G62368
TU78128 lncRNA downstream 675413 16098986 ~ 16100810 (+) True G62398
TU78174 lncRNA downstream 991905 16415478 ~ 16488182 (+) True G62432
TU78175 lncRNA downstream 991905 16415478 ~ 16488182 (+) False G62432
TU78233 lncRNA downstream 1078211 16501784 ~ 16504823 (+) True G62480
AMCG00020299 mRNA upstream 175587 15245022 ~ 15247620 (+) True AMCG00020299
AMCG00020297 mRNA upstream 178223 15235683 ~ 15244984 (+) True AMCG00020297
AMCG00020295 mRNA upstream 205177 15212090 ~ 15218030 (+) True AMCG00020295
AMCG00020296 mRNA upstream 223915 15166014 ~ 15199292 (+) True AMCG00020296
AMCG00020298 mRNA upstream 257213 15160597 ~ 15165994 (+) True AMCG00020298
AMCG00020304 mRNA downstream 19338 15442911 ~ 15496323 (+) True AMCG00020304
AMCG00020306 mRNA downstream 336512 15760085 ~ 15770745 (+) True AMCG00020306
AMCG00020305 mRNA downstream 347442 15771015 ~ 15778141 (+) True AMCG00020305
AMCG00020307 mRNA downstream 478939 15902512 ~ 15908316 (+) True AMCG00020307
AMCG00020311 mRNA downstream 579857 16003430 ~ 16011619 (+) True AMCG00020311
TU77751 other upstream 953907 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 1472160 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 1556644 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 1588375 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 2072495 13349677 ~ 13350712 (+) True G61675
TU78405 other downstream 1390801 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 2035587 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 2504755 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 2634985 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 2644214 18067787 ~ 18072043 (+) True AMCG00020407

Expression Profile