RNA id: TU77990


Basic Information

Item Value
RNA id TU77990
length 420
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G62283
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 15423155 ~ 15423574 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGGacttcagtccttcacggcatagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattaacaagatcctcctgtgtagttctgggctgattcctcaccgttctcatgatcattgaaactccatgAGGTGAGATCtagcatggagccccagaccgaggcagactgacagttattttgtgtttcttccatttgtgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggcgatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgatgattgcttctgtggacaggtgtcttttatacaggtaacaagctgagatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77869 lncRNA downstream 389079 15032135 ~ 15034076 (-) True G62191
TU77815 lncRNA downstream 655592 14703511 ~ 14767563 (-) True G62143
TU77717 lncRNA downstream 1021853 14345297 ~ 14401302 (-) False G62066
TU77716 lncRNA downstream 1021853 14353490 ~ 14401302 (-) True G62066
TU77567 lncRNA downstream 1508989 13913172 ~ 13914166 (-) True G61943
TU78228 lncRNA upstream 1056956 16480530 ~ 16480990 (-) True G62475
TU78317 lncRNA upstream 1192749 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA upstream 1192820 16616394 ~ 16617421 (-) False AMCG00020336
TU78319 lncRNA upstream 1192820 16616394 ~ 16617579 (-) False AMCG00020336
TU78347 lncRNA upstream 1245323 16668897 ~ 16669511 (-) True G62580
AMCG00020303 mRNA downstream 102879 15308859 ~ 15320276 (-) True AMCG00020303
AMCG00020301 mRNA downstream 115659 15270793 ~ 15307496 (-) True AMCG00020301
AMCG00020302 mRNA downstream 153729 15269069 ~ 15269426 (-) True AMCG00020302
AMCG00020300 mRNA downstream 157393 15246273 ~ 15265762 (-) True AMCG00020300
AMCG00020293 mRNA downstream 278072 15130659 ~ 15145083 (-) True AMCG00020293
AMCG00020310 mRNA upstream 444932 15868506 ~ 15892048 (-) True AMCG00020310
AMCG00020308 mRNA upstream 469653 15893227 ~ 15901574 (-) True AMCG00020308
AMCG00020309 mRNA upstream 498719 15922293 ~ 15933678 (-) True AMCG00020309
AMCG00020312 mRNA upstream 588491 16012065 ~ 16036730 (-) True AMCG00020312
AMCG00020313 mRNA upstream 643839 16067413 ~ 16078705 (-) True AMCG00020313
TU77709 other downstream 1090748 14330522 ~ 14332407 (-) True G62061
TU77648 other downstream 1291586 14129678 ~ 14131569 (-) True G62011
TU77536 other downstream 1614822 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other downstream 1614822 13805020 ~ 13808333 (-) False AMCG00020252
TU77394 other downstream 1757570 13664087 ~ 13665585 (-) False AMCG00020229
TU78130 other upstream 675326 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other upstream 675326 16098900 ~ 16102739 (-) True AMCG00020316
TU78145 other upstream 695415 16118989 ~ 16120153 (-) True G62409
TU78153 other upstream 829214 16252788 ~ 16255119 (-) True G62415
TU78161 other upstream 848877 16272451 ~ 16275573 (-) True G62421

Expression Profile