RNA id: TU78095


Basic Information

Item Value
RNA id TU78095
length 2676
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G62368
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16064095 ~ 16066816 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cattttaatattgaaagaTACAATTTAAAGTTCAGTTTGATTTATGTCAGCCCAATAAACCCATGGGcttccacatttaaattaaagatttattaattgatatactcacaaaaaaatatagtCTGAAAAAGTTTTTATACTCTCCAAAAAATACAACTAGACCACAGGTAGATGAAAACAGACAGTGATTTGAACAGAAAAAGATCAGGAAAAAgttgaagatttaaaaaaagaaagaaaaagaacagctCAACTGTTCTTAACTTAATAAATAGAGATGTATTGTTCTAGACATTATGAAGTCGGGGTTTATATGTGAAGAAATCCCCACAAAGGGTTTCTTTCCATATAGCTTTCAATTTAAGTCTCAGCGGTTGGAAAAACTACACATCGGACCCCGTTCCTTATTGTACGTGCAGGCTCTCGCTTCAAATGCTGGTATGCGTTCTCATGAAACAGTCGACGACCCATTCAGACTAAACACATGGGAGCTATGAATCGGGGGTAATACTGCAGAGCGAAATCTTTGGGTGCATAAAGTTTGAAACAAACGATATTCATCATTTCAACTCGTGTCAAAACAATATTGTCTAACCTTTGCggagaagaataaaaacaaaaaaagatggaGCTAATCTCTTGGAGTTCTAGAACTGCATTGACAAGGTAGGAGCAGCAAACTGTACTGGAGAAATGAATGCACCTAACCCAGTCAGAGACAGATACATTCACAGCCAAGGACGAGAGGGGAAAACCCAGTGACCTGACAGAGACAAAGCTACTTTATACCAGCAATACCCCCTTGTTTCGGTTTTAGACATCGTTAGAAGTAAATACAACAGTtggagaaaaaacataattaaatcatggctgcaaaacatgaatattaatcATAGGTAGCAACAGTGGTACATAGAAACCCAGCTTCGCAACCCATTCCTGTCAGGCACTTCCTAATTAATGTCCGCTCATTCATTTAAGCAGTAATACATGGAGACTTATGTCAAATaccaaaacaagcaaaaaaaatcaGCTCATGAGAACTTCACTCACACAAAGATGGacccattttattttccagtgggAGAAACTGAACAGGCGATCTTGAACACAGCAACATTGTGAGGGGCTAGTAGACACAACCACCAACTGGCATGCAACAATGTAACCATGCTCCCACCGTCAGCTCCAACAGCGGAATTACAATCTATAGCAGCTGCACCAGAAATGACACGGGAGATTTTAGGATTTTCCCAGCAAACCTCATTCTCTTGGCCCAGCGCTAGATGTGCATTATTTAAGAAACACCTTTCAGATACAGAATAAAGAGGGATCAACTCACTGTACTAAAAAAAAGGCAGTAGGAAAGCAGGTGATTTAATAAACCAATTTGTTGGTATATAGTAAGTAGTGGATGTCTTTTAGATTGTTCTCCTGCGGTGTGCAAGAATGCAGTTTTATAGTAAACTACCATACAAAACCTTTCGGATGCAATATTCCTTTAGATATTTTAGTTGCTGAAATATGACcacaaatgcactttaaaaaaataaatacatttcccagTTATGTAATAATTgtacttgttttgattttattgcaTGTATCTTAACATATGTAGTAACTACATTTCAGGCAGATCAGTTTCAGTCCGGTTAATTAAATACTCTGTCTTTAGCAGTAAGAACTCCACATGGCACTGGTTAAAAAGCACttaaaaacagttttccatTGTGTTGTAGTGCCACCTGTGGCCAGGAGAAGAAGTGCAGCAAGAAGCTCATACTAACTTTCATACCATTTTAGATGCAATAGTAACAACCTGACACTCTGCTCCCAGCAGTTTCCTTTCTAAGTAAGGGAGTAGACCTGCCACACATGAAAGACGGagggtggggggaaaaaaaataacattcttcCAAAGACTAAAGTGGTCACTCTTTCTGAAGTCACTTGGTCACTCACTTATAGTTAACACCTTTGTACATTTAGGGGGAAATTAAGATAATTACCAGGTATTAAAGGACAGTAAACACTGAGCACAACAGTTTCTGTCTTTCTTGTAACTCGTAGAGTACACTCTCCACATCAGGATTCCCTGTTAAACACTGAGTAAGAAACCTGCtttcatattatatatgaaatatacaaGACAGTTTCCCACTTGCTTCTTTTGTTCAATTAACTCAATGTCACAGTCTGAAGTACTCGTTCAGTAtgtgaaaaaagtaataaaataccTAGCGATCTTGCCATGTTAAAGCAGAGGTCTGGGTGCAACCTGGCACACGGGGTCTGTCTGTCCTGAGCCACAGTGCCCAGACGCACAGCTGCAGCCGCCAGATACATTGGATGCTGATGATTGGAGTTGGCAATAGAAGTGGCGCTTGGCTTTTCAACTAGCAGTCAAAACTTACATCTTTAAAATCTCAAATTAGTTATCATGTAAAAGTAATActcaacatttttttgttgttggttttgttctttttttggtgtttttgtatttttttgtgtgttttgtatgtttttttgtataaatgtattttttatgaccgttatatatacataataaaaccaTAAATCCTATTGCAGACCCTCAACATAAAACTAAATCATGCTTATATTCCCATTCTTAAGGACAATTTCCTGTTTTGGatgttaaccttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77989 lncRNA upstream 640522 15423207 ~ 15423573 (+) True G62282
TU77981 lncRNA upstream 729039 15333684 ~ 15335056 (+) True G62275
TU77943 lncRNA upstream 765914 15297747 ~ 15298181 (+) True G62251
TU77862 lncRNA upstream 1030012 15032042 ~ 15034083 (+) True G62185
TU77779 lncRNA upstream 1485393 14577507 ~ 14578702 (+) True G62118
TU78128 lncRNA downstream 32170 16098986 ~ 16100810 (+) True G62398
TU78174 lncRNA downstream 348662 16415478 ~ 16488182 (+) True G62432
TU78175 lncRNA downstream 348662 16415478 ~ 16488182 (+) False G62432
TU78233 lncRNA downstream 434968 16501784 ~ 16504823 (+) True G62480
TU78248 lncRNA downstream 466540 16533356 ~ 16535401 (+) True G62494
AMCG00020311 mRNA upstream 52476 16003430 ~ 16011619 (+) True AMCG00020311
AMCG00020307 mRNA upstream 155779 15902512 ~ 15908316 (+) True AMCG00020307
AMCG00020305 mRNA upstream 285954 15771015 ~ 15778141 (+) True AMCG00020305
AMCG00020306 mRNA upstream 293350 15760085 ~ 15770745 (+) True AMCG00020306
AMCG00020304 mRNA upstream 567772 15442911 ~ 15496323 (+) True AMCG00020304
AMCG00020315 mRNA downstream 37552 16104368 ~ 16112905 (+) True AMCG00020315
AMCG00020318 mRNA downstream 82504 16149320 ~ 16154632 (+) True AMCG00020318
AMCG00020314 mRNA downstream 110792 16177608 ~ 16180913 (+) True AMCG00020314
AMCG00020319 mRNA downstream 165765 16232581 ~ 16236548 (+) True AMCG00020319
AMCG00020320 mRNA downstream 187677 16254493 ~ 16274574 (+) True AMCG00020320
TU77751 other upstream 1594795 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 2113048 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 2197532 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 2229263 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 2713383 13349677 ~ 13350712 (+) True G61675
TU78405 other downstream 747558 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 1392344 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 1861512 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 1991742 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 2000971 18067787 ~ 18072043 (+) True AMCG00020407

Expression Profile