RNA id: TU78145


Basic Information

Item Value
RNA id TU78145
length 1165
RNA type TUCP
GC content 0.53
exon number 1
gene id G62409
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16118989 ~ 16120153 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTAACGGAGCGCGGTTTGGCCTGCTTTCGCCTAGACATCTCCCGTTTAACAGCCTTTCCCCTTCTTTAGTAGACTCTGGcccttttaaaaatgtccagGCATACAGATGAAGTGTGgagggtcttttttttttttttacttcttcgCCTGTTGCAATGCGGCAACTTATCTGGCTGCTAGGTAGGTCCAGTCCGGTGGCACTGGGAGACGGGGGAAGCTGGCTCGGCAATGCCAATCAACCCGGAGCCCCTTTTCCTGCTTTTTCCTGGCAACTTCTCCTCTGCTGTTGCAGCAGAACCAACCTGTAGAATCGAGAAGACAACTTGCCGATGTGCGCGACCGCGGCGAGATGGTCCTTTTGTTCCCGCTAAAGAGAGCCCGTCGCCGGTGGCGCTGGAGACCCTCGCCGCTCAAGCCCCAGTCCCCCCGCCAGCGCCCGGTGCCACAATCACGGCAGCGCTCTCACACCTGACCGCGGGCGGACCGAGGTGCCGATACCCGTCAATAATCTGATTACCTTAATTAAGCGGGGGGGTGCGATTCAATTTCAACAGCCTTGGgggcttttctttctttctttctttcttggctGTAAGCCTGCGCGGAGGTCCTCCTCTGATGAAGTTGCCCGAACTATCTCtgtatatttctatttctgtgaTTATTGCCCTGATCTGGCTAACACGGATCACGCTCCTCCGTGCGTTATTGTGCAGAAGGTGGCTCAGGAAAGCATTGCTTTTTCGCCCAGCATTTGCAcccaggattttgttttttgatttgtttgttttttttgttttctttctctctctctctctctctctctctctctctctctgtcagcctttttaatttcctttagaAAATGTTTGCGCTCGCtagcctctctctccctttttctttGTCCTGACTCTCGTCTTCCCTCCGCCTCCCGATCCTACTGCTGGCTGGGctgcactgcagacacacataATAAAGCCAGGCTTGGCTGGAAATGTAGCCGTGTCCCAGCAGGAGGATGTGAGAGTAGGGTCCCGGCGGGGGAGCGCTCTGATCCCGCAGGGAGCTCTGCACAGCCTGGGCTGAGCAGACAGAGAGAGCCAACAGCACCAAGCCATGGACAGCCATGGAAACTACAGTCTAACTGGGAACACAGATCGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77990 lncRNA downstream 695415 15423155 ~ 15423574 (-) True G62283
TU77869 lncRNA downstream 1084913 15032135 ~ 15034076 (-) True G62191
TU77815 lncRNA downstream 1351426 14703511 ~ 14767563 (-) True G62143
TU77717 lncRNA downstream 1717687 14345297 ~ 14401302 (-) False G62066
TU78228 lncRNA upstream 360377 16480530 ~ 16480990 (-) True G62475
TU78317 lncRNA upstream 496170 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA upstream 496241 16616394 ~ 16617421 (-) False AMCG00020336
TU78319 lncRNA upstream 496241 16616394 ~ 16617579 (-) False AMCG00020336
TU78347 lncRNA upstream 548744 16668897 ~ 16669511 (-) True G62580
AMCG00020316 mRNA downstream 16309 16099146 ~ 16102680 (-) False AMCG00020316
AMCG00020317 mRNA downstream 21436 16088956 ~ 16097553 (-) True AMCG00020317
AMCG00020313 mRNA downstream 40284 16067413 ~ 16078705 (-) True AMCG00020313
AMCG00020312 mRNA downstream 82259 16012065 ~ 16036730 (-) True AMCG00020312
AMCG00020309 mRNA downstream 185311 15922293 ~ 15933678 (-) True AMCG00020309
AMCG00020323 mRNA upstream 337426 16457579 ~ 16469287 (-) True AMCG00020323
AMCG00020325 mRNA upstream 352431 16472584 ~ 16473662 (-) True AMCG00020325
AMCG00020324 mRNA upstream 354120 16474273 ~ 16479633 (-) True AMCG00020324
AMCG00020328 mRNA upstream 414543 16534696 ~ 16548548 (-) True AMCG00020328
AMCG00020329 mRNA upstream 438389 16558542 ~ 16569600 (-) True AMCG00020329
TU78130 other downstream 16250 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other downstream 16250 16098900 ~ 16102739 (-) True AMCG00020316
TU77709 other downstream 1786582 14330522 ~ 14332407 (-) True G62061
TU77648 other downstream 1987420 14129678 ~ 14131569 (-) True G62011
TU77536 other downstream 2310656 13805020 ~ 13808333 (-) True AMCG00020252
TU78153 other upstream 132635 16252788 ~ 16255119 (-) True G62415
TU78161 other upstream 152298 16272451 ~ 16275573 (-) True G62421
TU78391 other upstream 672713 16792866 ~ 16793167 (-) True G62618
TU78680 other upstream 1490511 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 1874391 17994544 ~ 17997017 (-) False AMCG00020403

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027285 True 9094 lncRNA 0.39 2 NC_007129.7 17777527 ~ 17786790 (-)
grasscarp (Ctenopharyngodon idella) CI01000013_05402289_05403494.mRNA True 1498 mRNA 0.43 3 CI01000013 5401587 ~ 5403927 (+)