RNA id: TU78161


Basic Information

Item Value
RNA id TU78161
length 1579
RNA type TUCP
GC content 0.47
exon number 2
gene id G62421
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16272451 ~ 16275573 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATTCAGAAGTGTTaatgaaaggttttattttccaagTACAACTGCAGCTACCCTAGAACAAGGCCCTTCTCGAACCAATCTTCTTGCCCATGCGTTATCAAACAACTCTTAATGAGAATAAAGCaaaaaactgattaaatggtTTCATTGTCCTGAAACAACCCCTTCCCTCccccaaaacaagaaaaaaatgtatttaaaacttttattacattatacaatcaataaaatattagttAAGGCAGACCAGCAACAGGTAACAGTGCTAAATCAGGATTAACAAATACAAGGCTGGTCTTCGACAATCTCatttaccaaaacaaacaaacaaacaaacaaacaaacaaaaacaataaaaactgaaaatgagcTGCTGGTactggttaaaaataataatttaaagctGTATTCTAGTGTGCAGATGCAATACCATTGTAACAAAAATAAGCAAAGTCTTGGCccttttttcttcagttattcGGCGGTTTAGGGTTAATGTAAcgcaaagaaaaagaaaatcggCTTGAACAGTAGTAGGGCAGAAACACGGAGGGTAAAGGGGCAAGCAGCGACGATTTCCCACTGATGCTGGCGCCACCCCGCTACCAGTCTTTTACTTTTGAACCATTCTGCTTCAAATGTCATTGCATGTGCTAAACGGCAAAGCGGTGATGGATCTGGAGAGCCCATCCTCCAGCGTGGAGTAGATCAGTTATAGTATAGCACTGAGCAGCGCagcagagggggaaaaaaaagatgagaaAAACGAAATGGTCAACTCACAACACAAGAGCAGCCAATAGCAGGGGGCGGGACGGCGCCAGGTGCCCCCCGATacgctctccctctccagcaGTTGCAGCTTTGCTTCGGAGTTTTTcgttcagtgtttatttatttattcttaaaccCTTTCAATGAAACGAGTCTTTCATTTCAATACTACAaacatctacaaaaaaaaaagaaagaccgCAGGGGTACAACTCTATTGaagattattgtgttttttgtatagtTCGACTGTGCCATGAAGGATATGTTGAACAGCGTAGTGTTGGCTGCCGAGCCCCGCGCAGGCAACTCTCCAGGCTGTGCTCCGTCtccgctctctctcctctcctctcctggtGGTCCATCATCTGCGAGATGCTGCCTGTGACCCCAGTCGGCAGGAAGGTCACGCCGGTCCTGAGGCTCCTCACTCCATTTTGTGCGCCCACTTCATGTCGTCGCTCCGAGGCTTGTGTCCGGTCACGGTTTCGATCAGACCCTCCATCCGCTGCCAGAAGCCCAGACAGTGCAGAGGGAAATTCAGCCAACCTGGTGATGCAGAAGTACGTCTCGTGGGGGGCGACGTGGTGGATGCGGTGGTGCTTGCGGGGCAGGATGATGTGGCAGTCCTGCAGCAGTGTGACCCAGCGTGGCAGCCCAAAGTACGAGTGCGACCACTTGTGGATCTGGTTGGTCATGGTGACGAAGATGGCCAGGGCGAACACGTAGCACTCCCAGGGGTACAGATCGGCCAGGGcctctgcaacacaacacacagagcagTCAGCGGGGAGAGCAGACACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77990 lncRNA downstream 848877 15423155 ~ 15423574 (-) True G62283
TU77869 lncRNA downstream 1238375 15032135 ~ 15034076 (-) True G62191
TU77815 lncRNA downstream 1504888 14703511 ~ 14767563 (-) True G62143
TU77717 lncRNA downstream 1871149 14345297 ~ 14401302 (-) False G62066
TU78228 lncRNA upstream 204957 16480530 ~ 16480990 (-) True G62475
TU78317 lncRNA upstream 340750 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA upstream 340821 16616394 ~ 16617421 (-) False AMCG00020336
TU78319 lncRNA upstream 340821 16616394 ~ 16617579 (-) False AMCG00020336
TU78347 lncRNA upstream 393324 16668897 ~ 16669511 (-) True G62580
AMCG00020316 mRNA downstream 169771 16099146 ~ 16102680 (-) False AMCG00020316
AMCG00020317 mRNA downstream 174898 16088956 ~ 16097553 (-) True AMCG00020317
AMCG00020313 mRNA downstream 193746 16067413 ~ 16078705 (-) True AMCG00020313
AMCG00020312 mRNA downstream 235721 16012065 ~ 16036730 (-) True AMCG00020312
AMCG00020309 mRNA downstream 338773 15922293 ~ 15933678 (-) True AMCG00020309
AMCG00020323 mRNA upstream 182006 16457579 ~ 16469287 (-) True AMCG00020323
AMCG00020325 mRNA upstream 197011 16472584 ~ 16473662 (-) True AMCG00020325
AMCG00020324 mRNA upstream 198700 16474273 ~ 16479633 (-) True AMCG00020324
AMCG00020328 mRNA upstream 259123 16534696 ~ 16548548 (-) True AMCG00020328
AMCG00020329 mRNA upstream 282969 16558542 ~ 16569600 (-) True AMCG00020329
TU78153 other downstream 17332 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 152298 16118989 ~ 16120153 (-) True G62409
TU78130 other downstream 169712 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other downstream 169712 16098900 ~ 16102739 (-) True AMCG00020316
TU77709 other downstream 1940044 14330522 ~ 14332407 (-) True G62061
TU78391 other upstream 517293 16792866 ~ 16793167 (-) True G62618
TU78680 other upstream 1335091 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 1718971 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 1730595 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 1761469 18037042 ~ 18039960 (-) False G62961

Expression Profile