RNA id: TU78228


Basic Information

Item Value
RNA id TU78228
length 241
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G62475
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16480530 ~ 16480990 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACAATGAATTTCCCTCACATTTATTCCACAGGTTCTCTACCCACATGCCATGACACATCAGTGCATATTCTCCCCTCTCACACTGGCCTCCGCTCTTAGTGCTTCAGCCCATAATCCGTCCTCATGGCCAGtgatgccagtgtgtgtggatGGACACACACGATTCTTTTGGCTTCTTTTCACTTCGCTCTATTGCCAATAGataggcaggaactgtttttgttaatgagcgattgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77990 lncRNA downstream 1056956 15423155 ~ 15423574 (-) True G62283
TU77869 lncRNA downstream 1446454 15032135 ~ 15034076 (-) True G62191
TU77815 lncRNA downstream 1712967 14703511 ~ 14767563 (-) True G62143
TU77717 lncRNA downstream 2079228 14345297 ~ 14401302 (-) False G62066
TU77716 lncRNA downstream 2079228 14353490 ~ 14401302 (-) True G62066
TU78317 lncRNA upstream 135333 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA upstream 135404 16616394 ~ 16617421 (-) False AMCG00020336
TU78319 lncRNA upstream 135404 16616394 ~ 16617579 (-) False AMCG00020336
TU78347 lncRNA upstream 187907 16668897 ~ 16669511 (-) True G62580
TU78350 lncRNA upstream 198866 16679856 ~ 16680624 (-) True G62582
AMCG00020324 mRNA downstream 897 16474273 ~ 16479633 (-) True AMCG00020324
AMCG00020325 mRNA downstream 6868 16472584 ~ 16473662 (-) True AMCG00020325
AMCG00020323 mRNA downstream 11243 16457579 ~ 16469287 (-) True AMCG00020323
AMCG00020316 mRNA downstream 377850 16099146 ~ 16102680 (-) False AMCG00020316
AMCG00020317 mRNA downstream 382977 16088956 ~ 16097553 (-) True AMCG00020317
AMCG00020328 mRNA upstream 53706 16534696 ~ 16548548 (-) True AMCG00020328
AMCG00020329 mRNA upstream 77552 16558542 ~ 16569600 (-) True AMCG00020329
AMCG00020337 mRNA upstream 124626 16605616 ~ 16614656 (-) True AMCG00020337
AMCG00020336 mRNA upstream 136584 16617574 ~ 16624970 (-) True AMCG00020336
AMCG00020333 mRNA upstream 144248 16625238 ~ 16631859 (-) True AMCG00020333
TU78161 other downstream 204957 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 225411 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 360377 16118989 ~ 16120153 (-) True G62409
TU78130 other downstream 377791 16098900 ~ 16102739 (-) False AMCG00020316
TU78131 other downstream 377791 16098900 ~ 16102739 (-) True AMCG00020316
TU78391 other upstream 311876 16792866 ~ 16793167 (-) True G62618
TU78680 other upstream 1129674 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 1513554 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 1525178 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 1556052 18037042 ~ 18039960 (-) False G62961

Expression Profile