RNA id: TU78248


Basic Information

Item Value
RNA id TU78248
length 1585
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G62494
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16533356 ~ 16535401 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTACATTACACCGATTCTATATCTGACTTTTaacaaattgaaattaaaaaaataagacaaaacaaattaaacatgatccactcatacaaagcatattcataataaactatgCACAGTGAAGAAAATTTAATttgtggacaatttcctatgtaCAACAGAAGGATAAATAGCGTTAAAGGTAcgatgtatattttatgattgtgattatgaatgtgaaatgaatctagcattttaattccatgtagcaccttAACATCCTGGTAATGAAGGAATGAGAGGGAGACacttatacaaattataaatgattGAAAGGCTGTTAGCTTAgtatattcgtatagttgtctTTTcgcttctgcttgtctacatgtgatctcacgtgtttttgtttttccaaaaggaagaaaaaaaatcggTCACAGTGAGACATTTCTAACCTGAATGGTAATGGAAATGTGCTAAACATTTTTCCTATCattggatcctactcccagctaaaAGTAAGTGTTAGAGATTTTATGATTAATTAGCTCCTGCTCTGAGGGAGAATTCATATTTCTCCTAAACTAACTTTTGGCATAATTCctaggagtaattctgagatgttttatgcatacaAGCCTTGAACAACACACCCACTAAGGCACAGtacaaaaaaacttttatttacaAGAAAGGTCATCTTTGCTCCAGCATCCCCACTGCTGATGCCACCATCTCTCACTGTACAGAACAGCAGTGACATCCCAACAACAAGGCTGGCAAGATCCATTACAAACCCCCCGTGACAAAAAGCAATTTACACTTATTCAAAATTACAGGACCCATTTTCAGTTAGGACGTGGAAAGTTTGTACTGCGCACTAGATTTTGGGTAATTATCTATGTTGTTTTGATATCTGGATTTCAGCCAAATAGCTTTGCCTGAAAGCTTCCCAAAAGGACTTCAAGataagaactaaaaaaaaacaacatttagtTTTGCATTGGACCTCTTCCAAGTCTGGGTGACATCATAAAaggaggggaggggtgggggaagttaaatacaaaaaaaaaaatttctacacaacaaaacaggaaTAACAGGGTGAGGTTGCCCACGGGAAAAGACTGGGAGATACAAAATGCCAAGCTCCGCCAATTAGAGGAACCAGAGTCACTTCGGACAGGAAAGACAGTCGGCAGAACAAACACTGGCAACCAGGCAGCCATTTCCTGTCCCCAGGTGCCAAGAGAACTCTGCAAGCTGCCTTTTTGGGGGGTGCAAAGCACTAGCAGGCATCCTCTCCCTCGGTTGTCTCGTGCTCTCAAGCTGTGCTGATCTGCGCCACCCTGTGATCACTAGAAGGCATAGCGTGTACGGATGTCCTCCAGTTTCTTGGAGACCTCAGGGGGTGTCCTGTCCAGCTCTGCCGATACACTCTTCTGCTTGTTGGGGTCCATGGAGTTGAACTGCTCACACAGGTCCCCGTCAATAACGTTCTGACAGGGAAGTAGTAGGACCGGAAGCTAAGGTGGTCCCGCCCACACAAGGGGGGGAACTCTGAACGCATGTGCATCTCCAAGTGCTGGAAGAAATCGTGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78233 lncRNA upstream 28533 16501784 ~ 16504823 (+) True G62480
TU78174 lncRNA upstream 45174 16415478 ~ 16488182 (+) True G62432
TU78175 lncRNA upstream 45174 16415478 ~ 16488182 (+) False G62432
TU78128 lncRNA upstream 432546 16098986 ~ 16100810 (+) True G62398
TU78095 lncRNA upstream 466540 16064095 ~ 16066816 (+) True G62368
TU78259 lncRNA downstream 12335 16547736 ~ 16565189 (+) True G62504
TU78261 lncRNA downstream 12335 16547736 ~ 16549642 (+) False G62504
TU78274 lncRNA downstream 47485 16582886 ~ 16597660 (+) False AMCG00020331
TU78329 lncRNA downstream 109537 16644938 ~ 16646261 (+) True G62564
TU78390 lncRNA downstream 258263 16793664 ~ 16793880 (+) True G62617
AMCG00020326 mRNA upstream 80721 16450836 ~ 16452635 (+) True AMCG00020326
AMCG00020322 mRNA upstream 99299 16420323 ~ 16434057 (+) True AMCG00020322
AMCG00020321 mRNA upstream 233371 16293494 ~ 16299985 (+) True AMCG00020321
AMCG00020320 mRNA upstream 258782 16254493 ~ 16274574 (+) True AMCG00020320
AMCG00020319 mRNA upstream 296808 16232581 ~ 16236548 (+) True AMCG00020319
AMCG00020327 mRNA downstream 14685 16550086 ~ 16557457 (+) True AMCG00020327
AMCG00020331 mRNA downstream 62155 16597556 ~ 16604658 (+) True AMCG00020331
AMCG00020338 mRNA downstream 81015 16616416 ~ 16617243 (+) True AMCG00020338
AMCG00020330 mRNA downstream 98701 16634102 ~ 16640976 (+) True AMCG00020330
AMCG00020332 mRNA downstream 130741 16666142 ~ 16680624 (+) True AMCG00020332
TU77751 other upstream 2064056 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 2582309 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 2666793 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 2698524 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 3182644 13349677 ~ 13350712 (+) True G61675
TU78405 other downstream 278973 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 923759 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 1392927 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 1523157 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 1532386 18067787 ~ 18072043 (+) True AMCG00020407

Expression Profile