RNA id: TU78440


Basic Information

Item Value
RNA id TU78440
length 927
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G62659
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16987319 ~ 16989284 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAAGTCATGAAAACTGTGGCTTTAATGTAAACACTACATTCGATTGGTTTTGCAGCACAAACATCCCACAGGAGAGAAACACCATTCActaaaaaggaagaaaaaagcagcacaaaaaagcattcactgaaaataaaaaataaaaaatgaaaagagagcCTAACTGgtatatataatacactgtATTCTTTTTCTCAGAGCAAAAAGGCTAAAAGGGAAACAACTTTCCAAATCTACTGGTCAGTGAGAGCTGTGCTTTTTCTATACAGACCCGGAAGGTGAAGAAAGGCAGATCAGATTACAGTTTTAAACTAAGAGAAAGCGCACAAACCTGTACAGCCACACTGTCTCGGGTTAAGACAGCTGTGttccaaagtgtttttttttttaaaaatactccAGGCTAGTAAAGACATTGCAATGCAGGGTAAACAGGCAAAATAATCGGTACAGTTCATAGACATCAATATGGGTAAGTAAGAACGGTATCATGTATCTCAGGACCGTTGCAAAACttttaaaaaaggggaaaaaaaccttCTGTAGCTACAAAGCACAAGAAATagactttaatattattattatcattattattattattattatcatcatcatcataatcatttttttaagcTTCTACTTGTAAAGACTGTGCTAGGACCAGACCTATGGCATTCTACAGACATATTCCGCCCAGGAACCACCGTCTTCAAAATCTTACATCAACTGGGAAGGACGGCTGAGttggtctttattttatttcttttttttccccgttgACGTTTATGTGtcttgttgttgatgttgttttgttttttgtcgtTTTttttttgtcgtttttaattattacatttttttcgaaagcttttacatttttttaatttttttaccttttttttgttgtttgatgtttttttttgtttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78435 lncRNA downstream 63586 16896870 ~ 16923733 (-) True G62655
TU78418 lncRNA downstream 171947 16814314 ~ 16815372 (-) False AMCG00020346
TU78350 lncRNA downstream 306695 16679856 ~ 16680624 (-) True G62582
TU78347 lncRNA downstream 317808 16668897 ~ 16669511 (-) True G62580
TU78319 lncRNA downstream 369740 16616394 ~ 16617579 (-) False AMCG00020336
TU78445 lncRNA upstream 983 16990267 ~ 16990714 (-) True G62660
TU78464 lncRNA upstream 29506 17018790 ~ 17019552 (-) True G62675
TU78515 lncRNA upstream 130870 17120154 ~ 17175835 (-) False G62715
TU78513 lncRNA upstream 183285 17172569 ~ 17175835 (-) True G62715
TU78578 lncRNA upstream 375539 17364823 ~ 17370446 (-) True G62770
AMCG00020343 mRNA downstream 117141 16867232 ~ 16870178 (-) True AMCG00020343
AMCG00020344 mRNA downstream 137662 16848880 ~ 16849657 (-) True AMCG00020344
AMCG00020342 mRNA downstream 145809 16828951 ~ 16841510 (-) True AMCG00020342
AMCG00020346 mRNA downstream 169552 16794996 ~ 16817767 (-) True AMCG00020346
AMCG00020347 mRNA downstream 196037 16779003 ~ 16791282 (-) True AMCG00020347
AMCG00020357 mRNA upstream 5601 16994885 ~ 17000013 (-) True AMCG00020357
AMCG00020356 mRNA upstream 32568 17021852 ~ 17026667 (-) True AMCG00020356
AMCG00020355 mRNA upstream 38803 17028087 ~ 17032112 (-) True AMCG00020355
AMCG00020354 mRNA upstream 60066 17049350 ~ 17057242 (-) True AMCG00020354
AMCG00020359 mRNA upstream 83505 17072789 ~ 17074242 (-) True AMCG00020359
TU78391 other downstream 194152 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 711746 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 732200 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 867166 16118989 ~ 16120153 (-) True G62409
TU78131 other downstream 884580 16098900 ~ 16102739 (-) True AMCG00020316
TU78680 other upstream 621380 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 1005260 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 1016884 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 1047758 18037042 ~ 18039960 (-) False G62961
TU79413 other upstream 4322918 21312202 ~ 21312605 (-) True G63464

Expression Profile