RNA id: TU78445


Basic Information

Item Value
RNA id TU78445
length 448
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G62660
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16990267 ~ 16990714 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taatgtaatgtaatgcagccatgatttaaataatggaaGTCTCTCTTCCCCTACGCCGGTCTGCACTGTGAAATTCAATCGGAAAAAGTGACTTTAGGAGGTTAAACATGATATATTTGACATTTCTTGGCCTCAGTGGTTGTGTAGCAACAGAAGACAAAGTATAGTACCTTCACCCCCCTACAGGGAGTACGGTTGCCTTCAGTTCAGCTGCTCTGTGGTCTCCCTCTCAACGTGACTGTGCGAGATCTCTGCCACACAGGTTAGGGAGTAAGAGATTTTTAGAAGCTGTGCAGCagtgattgataaataaaaataaagcaaaataaatattttaaatcctggCTCATAaaaattttattattatgaaaataaaatcataattcaaatttaattagCATGTGTTTGTTATGTAGTTATTGCCAGATTTATTGTGGTTTATTGTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78440 lncRNA downstream 983 16987319 ~ 16989284 (-) True G62659
TU78435 lncRNA downstream 66534 16896870 ~ 16923733 (-) True G62655
TU78418 lncRNA downstream 174895 16814314 ~ 16815372 (-) False AMCG00020346
TU78350 lncRNA downstream 309643 16679856 ~ 16680624 (-) True G62582
TU78347 lncRNA downstream 320756 16668897 ~ 16669511 (-) True G62580
TU78464 lncRNA upstream 28076 17018790 ~ 17019552 (-) True G62675
TU78515 lncRNA upstream 129440 17120154 ~ 17175835 (-) False G62715
TU78513 lncRNA upstream 181855 17172569 ~ 17175835 (-) True G62715
TU78578 lncRNA upstream 374109 17364823 ~ 17370446 (-) True G62770
TU78718 lncRNA upstream 857444 17848158 ~ 17851113 (-) True G62880
AMCG00020343 mRNA downstream 120089 16867232 ~ 16870178 (-) True AMCG00020343
AMCG00020344 mRNA downstream 140610 16848880 ~ 16849657 (-) True AMCG00020344
AMCG00020342 mRNA downstream 148757 16828951 ~ 16841510 (-) True AMCG00020342
AMCG00020346 mRNA downstream 172500 16794996 ~ 16817767 (-) True AMCG00020346
AMCG00020347 mRNA downstream 198985 16779003 ~ 16791282 (-) True AMCG00020347
AMCG00020357 mRNA upstream 4171 16994885 ~ 17000013 (-) True AMCG00020357
AMCG00020356 mRNA upstream 31138 17021852 ~ 17026667 (-) True AMCG00020356
AMCG00020355 mRNA upstream 37373 17028087 ~ 17032112 (-) True AMCG00020355
AMCG00020354 mRNA upstream 58636 17049350 ~ 17057242 (-) True AMCG00020354
AMCG00020359 mRNA upstream 82075 17072789 ~ 17074242 (-) True AMCG00020359
TU78391 other downstream 197100 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 714694 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 735148 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 870114 16118989 ~ 16120153 (-) True G62409
TU78131 other downstream 887528 16098900 ~ 16102739 (-) True AMCG00020316
TU78680 other upstream 619950 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 1003830 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 1015454 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 1046328 18037042 ~ 18039960 (-) False G62961
TU79413 other upstream 4321488 21312202 ~ 21312605 (-) True G63464

Expression Profile