RNA id: TU78464



Basic Information


Item Value
RNA id TU78464
length 763
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G62675
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17018790 ~ 17019552 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctcacattaaaatgtacaaaaaaaaaaaaaaaggaatactaTTTGATGgatatatttctataaatatatataattaaatacatacatacatacatacatacatacatacaatattgcAAGAAAAATTTAATCTAATGCAACCGGATACCAAAAACCTGCTTCACTTACAGACTGCGCTGATTTGGGAGTGCCTATAAACCTCGCCCTCTTTGAAGAAGTGCTGCCAGAGAACAGCCCTTAACTGTTGTGCACAAAAATAACGTATTTTATTCAAATCCCACAGAGCCCCAGAGTTGACATATTGGGGGGGACCCAAACGAGACGAgtttgtgtgaaatgtatttattcctgtgcagattctttttaatttgtgaccACGATTAATTGAAATCCTTGTGTTGTCGATTGATGGGCACGGCTCCCTCAATGGAATCTGAAAATAGGAGGCCCTGATCTGCTTCGGGAGCcgccttttgtttttgttttgttcttttccttGATGTGTGACGGTGGATTTGAAGATCAGTACTTTGATCCATCTTATGCAATGAAATGCTTCTGTAGGAGAATGCCAAGTTAGAGTGAGGGCGCGTAACTGGGTTCAAAATGACGCCAAAGCCTCTGTCAGTCAGCGGTCGGTCTGTGGGACCCGGCGGACAGTAAAGCaggatggtggtggtgggggggtgcagaCGCTGTTCCACTACAAACAGAGTACCCGCTGACAGCCTCTGCCCTCCAGTCCGTTACAGCAAAGGTGCGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU78445 lncRNA downstream 28076 16990267 ~ 16990714 (-) True G62660
TU78440 lncRNA downstream 29506 16987319 ~ 16989284 (-) True G62659
TU78435 lncRNA downstream 95057 16896870 ~ 16923733 (-) True G62655
TU78418 lncRNA downstream 203418 16814314 ~ 16815372 (-) False AMCG00020346
TU78350 lncRNA downstream 338166 16679856 ~ 16680624 (-) True G62582
TU78515 lncRNA upstream 100602 17120154 ~ 17175835 (-) False G62715
TU78513 lncRNA upstream 153017 17172569 ~ 17175835 (-) True G62715
TU78578 lncRNA upstream 345271 17364823 ~ 17370446 (-) True G62770
TU78718 lncRNA upstream 828606 17848158 ~ 17851113 (-) True G62880
TU78802 lncRNA upstream 948681 17968233 ~ 17969691 (-) True G62951
AMCG00020357 mRNA downstream 18777 16994885 ~ 17000013 (-) True AMCG00020357
AMCG00020343 mRNA downstream 148612 16867232 ~ 16870178 (-) True AMCG00020343
AMCG00020344 mRNA downstream 169133 16848880 ~ 16849657 (-) True AMCG00020344
AMCG00020342 mRNA downstream 177280 16828951 ~ 16841510 (-) True AMCG00020342
AMCG00020346 mRNA downstream 201023 16794996 ~ 16817767 (-) True AMCG00020346
AMCG00020356 mRNA upstream 2300 17021852 ~ 17026667 (-) True AMCG00020356
AMCG00020355 mRNA upstream 8535 17028087 ~ 17032112 (-) True AMCG00020355
AMCG00020354 mRNA upstream 29798 17049350 ~ 17057242 (-) True AMCG00020354
AMCG00020359 mRNA upstream 53237 17072789 ~ 17074242 (-) True AMCG00020359
AMCG00020363 mRNA upstream 119110 17138662 ~ 17139769 (-) True AMCG00020363
TU78391 other downstream 225623 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 743217 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 763671 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 898637 16118989 ~ 16120153 (-) True G62409
TU78131 other downstream 916051 16098900 ~ 16102739 (-) True AMCG00020316
TU78680 other upstream 591112 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 974992 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 986616 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 1017490 18037042 ~ 18039960 (-) False G62961
TU79413 other upstream 4292650 21312202 ~ 21312605 (-) True G63464

Expression Profile