RNA id: TU78515


Basic Information

Item Value
RNA id TU78515
length 1899
lncRNA type sense_over
GC content 0.39
exon number 3
gene id G62715
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17120154 ~ 17175835 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAAACTAAAGGAGTATTTTAgacaattttgcattaaaatgatgttcagtgttaaaattagggttagggttcgaGGCATGCCTAGTTTAACACCCACTGTATATGCAGCTCTGACAACATGTAGGTTTCTGATGGAAAAAgtgatagaaaaaaaataccacGCAGGTttataattcaaacattttattaaatggaaCCAAAGAACGATTGGCACTTAGTGTAATTAAACTTAAATCAGCCTGGCTCTCAAAGAGAAGTTACTGGAACCACAATAACGGCATTAAAAACTTGTTCAGTATAGTCGGAAGGCTTTGGACAGCAAGATTGAGGAGCAAAAAGACATTCTAATAAAGAAGCAGCGCAGCAGTTTGTTGAAGAGATGTTCTGTACTGAGCTGCAAAGGACCAACACAAATGGAGGATGGCTTCTCCAAAGGGCGCACTCCTGGAAACCCCAGGTGCCACACCATGGTCCTGGAGAGCAGTAGTCCCACCAGACCAGCCCAAGAGGTGTGCCATGACACATCAAGCTCACTTTAAGCTTGATGTCCAGAATTAAAGAGTGCGATATGAGGGACTATGAGGGACTACGTCAATctagaggggcaaggaggaagcctataagaactggcacatacaagatctgggggagctcaggatcccatgatgggacccacctccggggacggtcagttccccctgctggagcccgagtccaagatcttttaaccattttatgaatgattatattttaaaatgaattttaaaaatgaattttaattgtttttaaagatttagttgtttttaaaacattaattgtttagggtttttttggtttagttttgttctatttttttgtcaaatacattgtccgttttggatttaaattttaaatgcattggaccttttttgtttgttttttatttttttaattgtttttttaattttgtccagtgcattttcagttattatcaatgtatttgaccttttgtttaatcacgtttgttttgttgttttgtgcacttgtttatttaaagtgaagtattttgttttcgttaaatcacaaagatttaaattttttttaagtgatcttaagaattgatttaaaaaaagtttttaatcacaagtattaaagagtGCGATACTCTAACACCCGGGGTTGTCCAGGTGGGTCCTTGGGGGCCCCACTGTGCCGTCACTCCTGTCATAATTGGCTTAATTTTACATAGAAAAAATTTCAATAACGTATTTCCCCAACACTTGAAAGTAAGTAAAAAGCTATAATATTACAGCAGTCAAAAATGTTATGTACAGTGGGTGCCCCAGAACCAAGAATGAGACCCACTCTTCCCTAAACACCCAGGAATCCCCCAGGAGGATCTGGCCCAACTtgacaaacagacacaacatGACTAACTGattcaagaaaatacaatttaacaaaaagACACCTAACATTTGCTCCAAGTGTTTTAGAAATTGGTGGTTTAAGGCAGACATTTCTAACCCGGGTTAAACGCTGTTCTCCAGGGTTAACTGTGGCCATATACCGTCACCATCCAATTTCCTgccttctccccttcctccgACCCCCCTTACATGGGCTCACTGCATTGTGGGAGTGGAATGTTGTACTCTTCCCAGGAGCGTCAGAGGAACAGTGACTGTGCCGATGGTGTCACTCGTTTCGGACAGGTTAACATTTGACCCGGCTTCAGAGAATCGGATTATTAAACCGGAGCCTCCTGGTCACAAAGCCTGCACAGCAAAGATTGAACGATGGAAGATTATCCAGGTTTTGCACAACCAGCTTCTCTTTACAACTTaaactttttcaaaaatgtaagactctgcaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78464 lncRNA downstream 100602 17018790 ~ 17019552 (-) True G62675
TU78445 lncRNA downstream 129440 16990267 ~ 16990714 (-) True G62660
TU78440 lncRNA downstream 130870 16987319 ~ 16989284 (-) True G62659
TU78435 lncRNA downstream 196421 16896870 ~ 16923733 (-) True G62655
TU78418 lncRNA downstream 304782 16814314 ~ 16815372 (-) False AMCG00020346
TU78578 lncRNA upstream 188988 17364823 ~ 17370446 (-) True G62770
TU78718 lncRNA upstream 672323 17848158 ~ 17851113 (-) True G62880
TU78802 lncRNA upstream 792398 17968233 ~ 17969691 (-) True G62951
TU78844 lncRNA upstream 961645 18137480 ~ 18138298 (-) True G62981
TU78888 lncRNA upstream 1008173 18184008 ~ 18186050 (-) True G63015
AMCG00020359 mRNA downstream 45912 17072789 ~ 17074242 (-) True AMCG00020359
AMCG00020354 mRNA downstream 62912 17049350 ~ 17057242 (-) True AMCG00020354
AMCG00020355 mRNA downstream 88042 17028087 ~ 17032112 (-) True AMCG00020355
AMCG00020356 mRNA downstream 93487 17021852 ~ 17026667 (-) True AMCG00020356
AMCG00020357 mRNA downstream 120141 16994885 ~ 17000013 (-) True AMCG00020357
AMCG00020367 mRNA upstream 141262 17317097 ~ 17325531 (-) True AMCG00020367
AMCG00020372 mRNA upstream 216722 17392557 ~ 17402108 (-) True AMCG00020372
AMCG00020374 mRNA upstream 232719 17408554 ~ 17415648 (-) True AMCG00020374
AMCG00020375 mRNA upstream 249476 17425311 ~ 17432646 (-) True AMCG00020375
AMCG00020373 mRNA upstream 267650 17443485 ~ 17451798 (-) True AMCG00020373
TU78391 other downstream 326987 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 844581 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 865035 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 1000001 16118989 ~ 16120153 (-) True G62409
TU78131 other downstream 1017415 16098900 ~ 16102739 (-) True AMCG00020316
TU78680 other upstream 434829 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 818709 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 830333 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 861207 18037042 ~ 18039960 (-) False G62961
TU79413 other upstream 4136367 21312202 ~ 21312605 (-) True G63464

Expression Profile