RNA id: TU78578


Basic Information

Item Value
RNA id TU78578
length 5586
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G62770
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17364823 ~ 17370446 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgTATTGGTGTACTTAATTTTGGTGCACTTAggacaacatttttaaaagttaagaAAGCTTTGTTCGGAATGACTGCAAAGCAAAATATCTGACCAGAAAAGTTGTTAGTAAAGTGTGCAGGATCGGCTGTAAGATCTGGAATTTCAAATCTCTTCAAAAGGTCCCAGTACTGGGCAGTATTTGAGAGTGTGTTGGGGGCTAATAAAACAGGGCTGGCATCAATATCAGCTCACAGcagtacacaacacacactagGGTGCTTAACAACATATAACCCTCTCAGCAGTTTAGTGCACTTTATCATAGATTACCATCAATTCTGAAAAGAAAGACTTGCAAAAAcagcactttatttttaacttttaatttaatttttttatcctCTTcagataatattttataatcagcatacatttatataacattCACAGTATTGTACACCCGACCCCTccctttcaatttaaataatataaatacaaagctccactaatttcattttttttccaggtaGTCAAGAAATAGGAAGCAAAGGTCATTTTCAGGATTCTCATATACAAAAAAGTacaagaataagaaaaatactgtccatagttttatttatttatatatatatataaaatgttctgttaTACAAAAATCTCCCAAGTTAATAAAAACGTCCCTtcttttgctatttatttatacatatacaatgaGAGCATAActagaaaatattttgttcattacATGATGTAGTGATAAATACAAGTTGTTGTATGTGGTTTTCTGTGGGTTACAAGGAAAGTGTCTCTGTGGCCCCGGAGTGAAGATTTAGGGCACCCCAGAAATCACTTCgctttttgtaatgtattaatttatatggaAACATATGGCATATAACTCCAGAGTCTCCACTGTGCATAACCTGTGTGCTTATAAGTGTTTCTTTTATGTTATTTCCAAATCCCAAGAGTACTGTGGGCATGCGGctcctgcgtgtgtgtgtgtatgtgttggagGAGAGAGTGAGTTAGTGAGTATGTTTTTAAGCATTACTGACAGAAAGCAGAATTCTGTCGGTGACACTAACGAGGATGATACCACTCCTATTTGGCTTCCCTCTACAATAGTgaactttgaaaaaaaaaagacataaatacataaataattaaaacactgctAAAACGCATTCATTgtggaaaaaagaaagtaatCTAAAACTAGACCTTGCCAAACCCCGTTCTGCAGATCCTGCTTGCTGCAGATCAGGGGCTGGGTTCTGCTCTGCTTGGCCTGACTATAGGAGGACTCAGAGCGTCCATGGCGCCCAACAGCAAGAAGGCATCCCTTAGTTGGTTGACAATAAACCAGTGGCATGGCTCAGTTTTTTGGAAAAATAGATGGGGGAGTAGGGGGGTAACACACCTGGTCTGCTGTTATGGGAGAAGAATCTTAAGAGCTCTGTGCTGCGCCACAAGGATCTGCCCCTGCGTGTCCCCTCGGGCAGACAGAGAGTCCGAAGTGTGCTTTTCTTGTTCCTGGTATGCAGGTGTCGGGCTGCTACTCCTGTTAGTGGAGTCTGTGTGTCCGGCCCCAGAGGTCTGTCTGCCGTTGTCCCAGCCCACCTGTGACCTGTGTGTCAAGCACGGCGTGACTGTGTACTGATGCTGTGCCCAGCCACTCTCTATACTAAAAAAGACTGCGTGGAGTCTGGCACCAGGAGAGCAGTCAGCGCTGACCAAGTGCGTCCCCCTCCCCACAAGGAGCTGTTCATCGCCAAGCCAGGACTGCAACACTTGTCACCTGCAGCACATCCATCTCGCCTTGACACTTTGCTCCAGCGGCAGCTGTGGTTGCTGCTGTAAACACTACTACGTTTGATGGAATCACATCCTCCAAATTGCCTCCATTTGCCAAGGGGAAGCACTGAGGCTGGGTCTGGCAGGGCACAGATCTGATACCCTGCCAGCTAGCCACCCAGGTTTCTAGTTGCAAAGcaattaaatatacttaaaaaaaaatgtaaaaggtaaAAACTCAGGGAAAaccaaatatgaattaaaaaataaaccaaatctAATTATGTTGTGCACCCTTCATCTTATGACTGATGCTGAATGATTACCCCAGTCATAGTGAGCAGAGCACTCAGGGGGGCCTTCTGGGGCGCCTGCTGATGCATTAGTGCAAGTGAAGTTCCTTCATTAATCTTTAACCAGACAGCGTAGCACCTTGTACACAGCACAAGGCTTGTCTTTTAGTGTCGGTAATGGACAGTAAGACCTGACTGAGAATGGGCAGTGCGCCTCTTCTCAGCCTGAGCGGTGGGAGCACTGGTAAAGCCGGCTGCAAGTGTGCAGCACAGATGCTAAGACAAGACTGCCATTGACGCATGTACACTgtacacatttctttttttagctgTGTTTTTAGACTAATTAGAAACGCTGTTCTGTTTGAAATCAGGGTAACTGCGTTGATAAACACACAGTATTCGCAATAGCAGTAAAAGTCTGGAGTCACTCCAATGTACATTATGAGTCTTTTCTTCTTCGATCagctctgtgcagtgtgtgggcaataatacatgttttgtacTTGTATCACATGCAGGAAGAGCCCTCCCAGACTGCACTTGTGCTTagcacagagaaaaaacaaaatccttcattattgttttcttcatatCCTAATACAGTGTCTTCGGCACAAACACACCCCAGTACCATCAGAGGAGGGGCTGCAACCTGAGAGTCTCAGCCCAAACTCGGTCGTACCTTTTTCCATGCTACAATATCACATTATCCgaaacataattaaaagaaaatcaaataacatttaaataaaaagaaagtctcTCCTCACTGGGCctaaaaacccaaacaaacagtGTCTGACTTACTTTCATAACAGAACAAACTCAGAGACACAAGTACCAGAGAATTACTAAGAGTTATTGTACAGAAGGTGCCTGTGAATTGAGGGGTCTGTGGTCAGCCTGGAACCCGAATGGACGGGTTTTACAGGCATTATCAAGCTGGCGTGTTGTGTTCACAAATGTGGACAAGGCATTtagagacaaaaaacaaacaaacataagatAAAGAAAGAAGACTAATCTGACTTCCCCTAAATATTTGTGTGATAAAACCGTGTGGTGACAGCAGATGAGAGAAGCATCAGGTTTCTCTGTGCAAGTTActgaaataacacaataaagattagtggttaaaatattaaatacaattaaaacatccaACATGGCAGATGGCCCTCTGCAGAGCCTGACAGACTGCACAGAAAACAGCAGTAATTATTTGATGAAGTTTGAAGTTCTCcccattttttttaagtcaggAAATCGCTTGATAGGGATATTATGGATGTTGTATAATTGATGAAGCCACTTCCATCACTGTGATCTGACACTGCATCAGCTGATGTGTGCcgggggaggcgggggggcaGTGGAGGCAGAGGGCTGATAGCGCTTACTCACTGTGCCTCAGCGACAGAACCAAGCCAGAGAGATCCCAGGCTGGTAGCCGACATTTTGGAAAAGGcacaaaaaaccaacaacaaatgTAAAGGAAGTGGGATACAAACATTACTGCCCGCAGTGATGGACAGAGTTTGCAGGAATAGTGACGATcgtgcctgtgtgtttgtgttggcgTTACTTTGCCTTCTCTGTGTGGCTGGGGTGCAGttgttttgctgtgttgctTTCTGGTTGTTTTGTAAGTACACCAGGGAAAGCTGAACCACCCAGTCTGACAGCTGAAGACACAAGGAATGTGTGGCCCTGCGCAGCACTGCTCAGAGCCACAGACAGCTGTGGGTACAGTGAGTGTTGGATGGCCCTGTAGAGACGTCCTTGCGTTCACACAGGGGGTTAAACTTgggtaattatttaataatgtgtcGAGAAGCGGCTTCCTTGCCTCAGGAATGCTAACTTGATGCTCCAGTAAGAggcttttaataaaaacacattaaaaacaaaataataaatataggttgaaaaacatatttaaagaagGTAGGGACAGGCAATTAAAGACAGTACAGCTGAAGTTACCCTCAGGCTGCATGCACGTGTGTATTATTTTGACTTAGAGGGCATTAAGGTGTGACCTCATGTCAGGGAAATAGAATGGGATTGTGGGTATTGTGTTAATGCTGCAGGAATCGCTGCTGCTTCCTGTCCTGCGCGGTCAGCCATCATATTCTATCTGTGCGTTTGTTCAGTCAGAGTTTAGGTTGTGTCGTATTAGGCATGTGCGGCAAACCAGTTGCTTAAAAGGGTTTTTTCCAGTGCTTGGAATGTCCAATCTCAGAAGAGTACCAGACTGGCTCGGCTGAACAATATCATAAATGAAGAAAGCAAGGCTAGCATAGGGAACTCAAGGCACCTCTGTACAGTAACCAACAACTTTGCTGCAGCAGCTTTTAGGGTCCAAGAGAAGGAGAGCCCCCAGGCTGCGGAATCAGTTTCCAAGAGTTTTAGATGCAGGAACAACATCTGGGCACTTTTAGACCAAAAAAAACCTAGTGATTCTAGTGATGTTTTTCTTGTAactattgtcattattatttgtatgtttgttataGAAATGAGGTATTAGATTATAAAAAGTGGAAATAATCAAGGGTAGAAGAATCCTATTTGAGTTTTAGTCCCCCAAGGTTACATTTTGTACGAATTCTAAGGAAACTAACAACATCCCTTCCATGgatctctgttttgtttcttcctaGCTACAGTCCCCACCACCCTCTTCCCCATCAGTGGGGCGGTGTGTGTGGGGGATTTACAGTGTGATGACATTGCCGTCCTCGCGCATGCTCTCCTGGCTGATGCTGGTTTTGCTGGGGCTGCCATTGTGCGTGTTGAGTGAGCTGAGCGAGTTCTTGCTGTCGGAGAGCAAGCTGTGCAGGGAGGTGCTGGGCTGCATGTGTCTCGTCATGCCAGCCTGGTCCCCGTTGAGGAAGTCGGATGGCAGGTAGGGCGGCAAGCTGTCGCTTTCGATAATGAGATCGCCGTCCTCGTCGCTCTCGCCCTCTGCCGTGCTGTAGTTACTGAAGTACTGGGAGGCCGGGCTGGGCGTGCTGTCGTTGGAGAAGCCCGAGCTGCCCGACGCCTTGCTGCTGCGCACCACATTGTTGCGCTGGTTGGCCGGCTTGACGGTGATGATGAGGTTGTGGCTGTTGGCCACCATCATATCTGTGACCTGGTCCAGGGACTTGCCCACCACGTCAATGCCATTCACCTCCAGAATTTCATCGTTCACTCCCAGCAGCCCCGTGCTATCCGCCAGCCCGCCCTTCACCAGCCTCGAGATAAACACGCCCGGCACCTTCTCCACGCCCTGGCGCgtcacacgcacactcacaccaTCCCGGATGTAGAAGCCCAGTGGCTTGTCCGAACCGTGCTTGTGCAGCCGCACACGTCGGTGCGTCTCGGGCAGTATGTCCACGTCAATGATGGAGGAGATCTGCCGGAAGTCCTGAGGCAGCCCGATCATCAGGTGCGGCTTGCTCTTCTGCTGGGCTGGCCGCAGCCCAGGCAGCCCCTTCTTCTTCCGCTGAAGGGAGTTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78515 lncRNA downstream 188988 17120154 ~ 17175835 (-) False G62715
TU78513 lncRNA downstream 188988 17172569 ~ 17175835 (-) True G62715
TU78464 lncRNA downstream 345271 17018790 ~ 17019552 (-) True G62675
TU78445 lncRNA downstream 374109 16990267 ~ 16990714 (-) True G62660
TU78440 lncRNA downstream 375539 16987319 ~ 16989284 (-) True G62659
TU78718 lncRNA upstream 477712 17848158 ~ 17851113 (-) True G62880
TU78802 lncRNA upstream 597787 17968233 ~ 17969691 (-) True G62951
TU78844 lncRNA upstream 767034 18137480 ~ 18138298 (-) True G62981
TU78888 lncRNA upstream 813562 18184008 ~ 18186050 (-) True G63015
TU78936 lncRNA upstream 987379 18357825 ~ 18358910 (-) True G63057
AMCG00020367 mRNA downstream 39292 17317097 ~ 17325531 (-) True AMCG00020367
AMCG00020363 mRNA downstream 225054 17138662 ~ 17139769 (-) True AMCG00020363
AMCG00020359 mRNA downstream 290581 17072789 ~ 17074242 (-) True AMCG00020359
AMCG00020354 mRNA downstream 307581 17049350 ~ 17057242 (-) True AMCG00020354
AMCG00020355 mRNA downstream 332711 17028087 ~ 17032112 (-) True AMCG00020355
AMCG00020372 mRNA upstream 22111 17392557 ~ 17402108 (-) True AMCG00020372
AMCG00020374 mRNA upstream 38108 17408554 ~ 17415648 (-) True AMCG00020374
AMCG00020375 mRNA upstream 54865 17425311 ~ 17432646 (-) True AMCG00020375
AMCG00020373 mRNA upstream 73039 17443485 ~ 17451798 (-) True AMCG00020373
AMCG00020382 mRNA upstream 179305 17549751 ~ 17559095 (-) True AMCG00020382
TU78391 other downstream 571656 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 1089250 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 1109704 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 1244670 16118989 ~ 16120153 (-) True G62409
TU78131 other downstream 1262084 16098900 ~ 16102739 (-) True AMCG00020316
TU78680 other upstream 240218 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 624098 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 635722 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 666596 18037042 ~ 18039960 (-) False G62961
TU79413 other upstream 3941756 21312202 ~ 21312605 (-) True G63464

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00026500 True 3890 mRNA 0.41 3 NC_007129.7 22028674 ~ 22094102 (-)