RNA id: TU78680


Basic Information

Item Value
RNA id TU78680
length 1684
RNA type TUCP
GC content 0.42
exon number 5
gene id G62853
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17610664 ~ 17626189 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGGAGGCAGTACGCGTGAACCTAGCAGCTTGGGATTGACAGGAACGCTAATGCCTATCTACTGAGCACCAATCCACCATCCTCCTCAGCATTGCACAGCTTTTCTGCAGagaataaatcacatttaacaaCCTGCAGTCTCTGTACCTGGTTCGCCAAGAGATGACCGTATCCCAGAAGCACCTGGGGGAGTTCTGCGATGCCCTGAAACAGTACCTGAAGAATGTGTCCACCCAGCGCGACTGCTTCCACGTCACCGCAGTGAGACTTCCAGATGGTATCAGCTTTGTCGTTTATGAGTTTtgggaaggagaggaggaatGGAAGAGGCATCTCCAGAGCGTGCCCTGCAAGGTGTTCCAGCATGTGAAAGTGGACACGCTGTGCCAGCCTGAGGCCCTGTCCACTGTGGCCGTGCCATCGGCCTGGTGTAGCCTGAACAGGGACTGACTCGAGCTGGAACTCCCCTCACAGACGACCCCCAGCTGCTGTCTGCAGAGCCTGCTCTCCGGTCTCTGTTCACTGAATACTCTCCCCCAAGGCAGAGGATTTTCTCGCATCTTTTTGTAATGACttgtttacaaacagtgtctgttAGATACTTAACTGAGCACACCGCAGGGAATGCTGGGTCTGTGAGGGCTTTGTCATATTTCTGTCaaagtgaaggaaaacaaaaaaaaacatatatccCACCAATCTGGACTGAGAGCAACTCTGAGCCACAACAATGGCAAATGCAGGAAACTTTTCAACAGTCTTACCTAAACTTAACACCGGCTCAATCAGTCTATCCTTCGTGGAACGGCACActttatatgaatgtatatacagtgctttaaaaacaactaatatAGAATATCTATAGAAAACGTACTGTTTTGATTTGCATCTTCTTTAGGAGCCCAGTGAGGTCACTTGTTGCTTTCTCTTTAGGTTTTCTATGGAGTGAATAAATAGCTCACGCTAGACTTACACCTTCTTATATTAACAGTGTCTGGTACTCGATCTATGGAGGTCAGAAAAACAAgctaacaaagaaaaaagtattatcTCTGTTGTAGCAGGCTGATTAAAATCAGTTGATAGTGTCTTAGTTAAAGGTTCATTTTCTGCTCTTATAAAGTTCCCTATTCTTTGCATATTAGATACTAGGGAATTATTGGCCTTGGTCAGGTGCAAAACCTTTTATTGAATTTTACAGAACCCATTGTTCCAAATgttggttttaaaatatcatagatattgtttttgttttctccaagtAAATATTATTGCAGATAGCTgctgtgtgtgaacagtgtaATCTCACCTGGTTTTGCTTTCCTTCACTTTATGGCAAGTGCATGTAGTCTGGACGTCCAGTAACTTATTTGCAGTAGAAATTAGCTGTGCTACTTTAAATGGTTTTTGtgcatttcttatgttcttttataATCCTACAAATGACTGGATAGACGAGAAAAAAAGATGGAGAATGAGTCTGCAAAGTCACTTTTATGGCATTGTTTGATTATATACTACTTCTTATAATTCTGTATGTTTCAGTAAACTTCCTATCTCTCTTTAACTCTGGGAATAGAGAGGGCGGGGATGCAAGTATTATATTCCGTCTGAAAGTAGGTTACTTATCGCTCATGTACAGTAAAGGTACTATGAAACAATAaaacttgaagaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78578 lncRNA downstream 240218 17364823 ~ 17370446 (-) True G62770
TU78515 lncRNA downstream 434829 17120154 ~ 17175835 (-) False G62715
TU78513 lncRNA downstream 434829 17172569 ~ 17175835 (-) True G62715
TU78464 lncRNA downstream 591112 17018790 ~ 17019552 (-) True G62675
TU78445 lncRNA downstream 619950 16990267 ~ 16990714 (-) True G62660
TU78718 lncRNA upstream 221969 17848158 ~ 17851113 (-) True G62880
TU78802 lncRNA upstream 342044 17968233 ~ 17969691 (-) True G62951
TU78844 lncRNA upstream 511291 18137480 ~ 18138298 (-) True G62981
TU78888 lncRNA upstream 557819 18184008 ~ 18186050 (-) True G63015
TU78936 lncRNA upstream 731636 18357825 ~ 18358910 (-) True G63057
AMCG00020382 mRNA downstream 51569 17549751 ~ 17559095 (-) True AMCG00020382
AMCG00020373 mRNA downstream 158866 17443485 ~ 17451798 (-) True AMCG00020373
AMCG00020375 mRNA downstream 178018 17425311 ~ 17432646 (-) True AMCG00020375
AMCG00020374 mRNA downstream 195016 17408554 ~ 17415648 (-) True AMCG00020374
AMCG00020372 mRNA downstream 208556 17392557 ~ 17402108 (-) True AMCG00020372
AMCG00020385 mRNA upstream 33672 17659861 ~ 17673675 (-) True AMCG00020385
AMCG00020392 mRNA upstream 81924 17708113 ~ 17761880 (-) True AMCG00020392
AMCG00020391 mRNA upstream 149795 17775984 ~ 17794499 (-) True AMCG00020391
AMCG00020390 mRNA upstream 179342 17805531 ~ 17810647 (-) True AMCG00020390
AMCG00020389 mRNA upstream 187126 17813315 ~ 17816888 (-) True AMCG00020389
TU78391 other downstream 817497 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 1335091 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 1355545 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 1490511 16118989 ~ 16120153 (-) True G62409
TU78130 other downstream 1507925 16098900 ~ 16102739 (-) False AMCG00020316
TU78823 other upstream 368355 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 379979 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 410853 18037042 ~ 18039960 (-) False G62961
TU79413 other upstream 3686013 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 4917653 22543842 ~ 22544689 (-) True G63679

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU215931 False 2821 TUCP 0.43 8 NC_035914.1 18526386 ~ 18576437 (+)