RNA id: TU78718


Basic Information

Item Value
RNA id TU78718
length 2632
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G62880
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17848158 ~ 17851113 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTgatctttatattatttttattttagattaattattataataaaatacattctgtgCTGGTACAAGCTATTAGCAAAGAAAAGCAATCCCTCAACAGTTCCCAGAACACTTACTAAAGTCAAACTCTTCATTGCATAATTAAAATTGGATTGAGATTGAGttgtaggtgctttcagcagtggTAGACACCTTTCTATCACTCCCCACtgttgtcaaagtcgctcagatccttacacaatttttcctgcttctaacacatcaactttttattattttattatttttgtcatttagaagacactcttatccagggcagcttacatttgtacccatttatacagctgggcatttttacTAAGTAAAGTATCTtagtacaacagcactgcccccaTTCCAGTGCTTTGAGGAcaaactttgaggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattatcagtgttattcacttcacctgtcagtggtcataatgttatggatgatAGTTGTATATTGTGTAATGCATATGTAAAGCACCTATATATAGAGTgccttgcaaatgtattcagacccctgatcaatgaattactgaattacaaatggtacattgaatacttatgcacgcaccatatttcagttttttatatttcttacaaatatttcccaacattaaaccaatgtcaccttacaataatttgattttgagtttcagtgtttgaaaacaaaatatcaaacagtCAAACAATTTGAGAATTGGTCAGgtgtctgaatacttttgcaaggcaccatatatgtatatattgtaaaatatagaaGCACCATGTTACATCCATTAcctttaatgtatataaaagaaaatatataacatggactaaattaaaaaaagccaaGTTGTCCAAATGACAACCACCCTTGCTTGTTAGTTGAATAAAAATTCCTAATCAATCATTCTTCACTTTTCCATATAGTATATATAAGTGGtaagttttaattttcttcagacCTAGACCTGTAACTGTGAATTGTAATAAGACATCATTCAAGATTTTTAAATGCCAGGCAAGAcatataaaacatcttaaacagAACCGTTGAAGTTCAAAATACAAGTGTGATGGAAGAGTCCAAAGCCAGGAGAatgatacattatacattttatggacattttccaAATATGTTAAGCTGTCTGGATCTTTACAATATGATTTGTTCAATCAAGAGAGcttgtaaataatgaataaccAATTACTACAGTCCTCTCCCCAGGAAACAGGAAGTTGCACAGACCTTGTTTTGTCTGGGTAATGCGAAGCTGCACACATACTTTGCAGATACACAGCTGACATTCAAGAGAAACAGACAAACTGGAACAATACTGTGAACACATACTGATAGAGATTGTCTTATCTGTTGACTGTGTAATTGGTTCAGGAACACATTCCCAGTTTCCACAATAAAGGCACTGCTGAACTTCCCCCACACAATCTGCTACTGGGTGGGACCCGGCTGGACAGTTTGCTGGTGTGGAAAGAAGGCATTTGAGATAGGAAGAAATGCACAGGACCTGAGGACAGCTCTGAAGCTGATTGAAACTGTGGCAATGGTGACTGTTACCTGTACCTTCCTCCTGAGCTGCCAAACACAAGAGTTTCCAGAATGAGAGACAGAAAGGGGGAAGTGTCCACACAGTATGAGATGGGGAGATGCACACTGCATGGCTGGCCATGACATGTTCCATCAGGGGTTTCGATCTCAGAAGAAATGGCAACTCGGCCTCTTAGTACATGGGAGACTGCAAGGAGACACGTGGTCTATCAAACCCCCAGGCTGAGGctgtgataatctcagccaaaatactggaagtcatttgaagatatcttgaaatgatttacagatatctcaaaatgaataggaagtcatttgcagatatctctaaatcacataaagatatcttgaaatgcatttagagatatctctaaatgattatttggcttgccatacagcagggAGACCGGtgataaataatgcacattttctggGAGTGCTACCATGTAATGTCTGTGCCACATCCTTTGGGGCAGGTCTCACTTCAGTGCTCCACTCCTCAACAGAAACAAAGGGGAAGGGgctgattgtgtttttgtacattAAGTTGGTATGTTTACAGAATAAAAGGCCCTATGACAGAATTTGAAGAGGCCTGATAATACTATGGGAGATTTGAGGATACACACAGGGTCTCATAATGTATACAAACACTATGCTAAAAAAGGAAGATCTACTTCCTTGTCTCCATGGCCATCTGAAAACTGATTGTAACCAATGCGGTCAACATCAAACTGATACCGGTGTTTCAAACAATGCAATATGAGGccggagggagagggaaggggatAGGAGGTCCTACTCTATCTTGGCCAAAAGGCAGCTGACCAGCTTCTGCAGGTCCTTTGCCCTCATCTTGGCAGTCTGGAGCACCTCCTCATGATTGGCCTTCTGCTTGCTGTTGTAGTCCATCACTGCCTTGTTGGTGATGAGTGACAGGCCAAACACCCTCATGCCACAGTGCCTGGCCATAACCACCTCGGGCACAGTGCTcatg

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78578 lncRNA downstream 477712 17364823 ~ 17370446 (-) True G62770
TU78515 lncRNA downstream 672323 17120154 ~ 17175835 (-) False G62715
TU78513 lncRNA downstream 672323 17172569 ~ 17175835 (-) True G62715
TU78464 lncRNA downstream 828606 17018790 ~ 17019552 (-) True G62675
TU78445 lncRNA downstream 857444 16990267 ~ 16990714 (-) True G62660
TU78802 lncRNA upstream 117120 17968233 ~ 17969691 (-) True G62951
TU78844 lncRNA upstream 286367 18137480 ~ 18138298 (-) True G62981
TU78888 lncRNA upstream 332895 18184008 ~ 18186050 (-) True G63015
TU78936 lncRNA upstream 506712 18357825 ~ 18358910 (-) True G63057
TU78976 lncRNA upstream 546354 18397467 ~ 18398731 (-) True G63092
AMCG00020389 mRNA downstream 31270 17813315 ~ 17816888 (-) True AMCG00020389
AMCG00020390 mRNA downstream 37511 17805531 ~ 17810647 (-) True AMCG00020390
AMCG00020391 mRNA downstream 53659 17775984 ~ 17794499 (-) True AMCG00020391
AMCG00020392 mRNA downstream 86278 17708113 ~ 17761880 (-) True AMCG00020392
AMCG00020385 mRNA downstream 174483 17659861 ~ 17673675 (-) True AMCG00020385
AMCG00020397 mRNA upstream 75399 17926512 ~ 17930590 (-) True AMCG00020397
AMCG00020398 mRNA upstream 99221 17950334 ~ 17955926 (-) True AMCG00020398
AMCG00020400 mRNA upstream 130282 17981395 ~ 17984641 (-) True AMCG00020400
AMCG00020403 mRNA upstream 136068 17987181 ~ 18015862 (-) True AMCG00020403
AMCG00020402 mRNA upstream 178260 18029373 ~ 18039986 (-) True AMCG00020402
TU78680 other downstream 221969 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 1054991 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 1572585 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 1593039 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 1728005 16118989 ~ 16120153 (-) True G62409
TU78823 other upstream 143431 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 155055 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 185929 18037042 ~ 18039960 (-) False G62961
TU79413 other upstream 3461089 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 4692729 22543842 ~ 22544689 (-) True G63679

Expression Profile