RNA id: TU78735



Basic Information


Item Value
RNA id TU78735
length 577
RNA type TUCP
GC content 0.56
exon number 1
gene id G62895
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17928328 ~ 17928904 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCAGGTTCAAAAGCTGAATTTGCGCTGCACCTTGATGAATGCCTGGTCTCGCATTCGTGATGGCCCTGTGGTGTCAGACAGCTTCTCCAGGACCCCCACGTTCTGCTCGATGGTGTGCAGCGTGTCCTCCAGCTGCTCCACGTGTGCCTCGATGCTGCCCAGGACCCGAGCTTCCTCCTGGGAAAGCACCTGCAAGGCCTTCTGCTCCTCCTTCTGCAGGGCCTGCCGCATGGACTCGTACTGCTGCTGCACGTGGGCCCGCGCCTCACTCACCATCCGCTAGGGAACCGCAGCAAACCCCAGTTAACCCTCGTCTCCCTTCACCTCCTCCTGTGCCTCGTGTAGGTACACAAACCCCTTTTTGTTAACTTAGCTTGTCTGCTAATACAGCTGTCTAGTTCAGTGATCTGCCACCGTTTTGGGAGGAATCAAATAGCTCAGTTCGTTTGGGCATAGGGCTGACAAAACCAGGGCCTGCTCTAGGTCTCAAGGTAAAGTGCTAGTAACCCACTCTGTGCTGTAGCCACTAATACCTCATCAACCTTTCCAGGTGACCTGATGCACTGCTGGTGTGAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU78590 lncRNA upstream 425065 17404385 ~ 17503263 (+) True G62781
TU78603 lncRNA upstream 494128 17433642 ~ 17434200 (+) False AMCG00020370
TU78471 lncRNA upstream 882178 17030193 ~ 17046150 (+) True G62681
TU78470 lncRNA upstream 892830 17031817 ~ 17035498 (+) True G62680
TU78429 lncRNA upstream 938749 16987319 ~ 16989579 (+) True G62654
TU78749 lncRNA downstream 25419 17954323 ~ 17955274 (+) True G62909
TU78758 lncRNA downstream 52129 17981033 ~ 17983521 (+) True G62912
TU78763 lncRNA downstream 58944 17987848 ~ 18032139 (+) True G62916
TU78838 lncRNA downstream 206089 18134993 ~ 18138267 (+) True G62975
TU78859 lncRNA downstream 268675 18197579 ~ 18200101 (+) False G62989
AMCG00020393 mRNA upstream 1912 17917969 ~ 17926416 (+) True AMCG00020393
AMCG00020399 mRNA upstream 16188 17905597 ~ 17912140 (+) True AMCG00020399
AMCG00020387 mRNA upstream 39541 17872823 ~ 17888787 (+) True AMCG00020387
AMCG00020388 mRNA upstream 79978 17837383 ~ 17848350 (+) True AMCG00020388
AMCG00020386 mRNA upstream 97262 17824817 ~ 17831066 (+) True AMCG00020386
AMCG00020394 mRNA downstream 2025 17930929 ~ 17941836 (+) True AMCG00020394
AMCG00020396 mRNA downstream 16254 17945158 ~ 17950059 (+) True AMCG00020396
AMCG00020395 mRNA downstream 27804 17956708 ~ 17980551 (+) True AMCG00020395
AMCG00020408 mRNA downstream 131221 18060125 ~ 18065789 (+) False AMCG00020408
AMCG00020407 mRNA downstream 141716 18070620 ~ 18072051 (+) False AMCG00020407
TU78611 other upstream 456459 17459160 ~ 17471869 (+) True AMCG00020371
TU78405 other upstream 1112471 16814374 ~ 16815857 (+) True G62632
TU77751 other upstream 3459028 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 3977281 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 4061765 13863477 ~ 13866563 (+) True AMCG00020255
TU78775 other downstream 129654 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 138883 18067787 ~ 18072043 (+) True AMCG00020407
TU78921 other downstream 403665 18332569 ~ 18334032 (+) True G63045
TU79166 other downstream 1668334 19597238 ~ 19600737 (+) False AMCG00020439
TU79182 other downstream 1702421 19631325 ~ 19636221 (+) True AMCG00020438

Expression Profile