RNA id: TU78749


Basic Information

Item Value
RNA id TU78749
length 604
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G62909
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17954323 ~ 17955274 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCGTCGTCGTTTGTTGCATATTGTTTATCACCCGAAAACGAGTAGCCCACACCTGCCGGGGACTCCAGGTACAATACATTGGCGATTTGATTCCAGCTGAATTCATTGCGGTACAGAGTGGCACCGTCGTCATTCACCTGCCAGGAAGGAAACCGTTCTCAGTTTGCCCCCCAAATTAAACCAATCATGTGCGGCATTTTACAGCTGGATAAACATTGATAAATATTGTAAAGCATTACGTGGAAAGGTCCGTTCTCCGACAAGAAGCCATCGAGAGAGCTGCAGCCCGGACCGCCGTTCAACCACAACACAAGCGGGTCTTCGAGCGGGTCTCTCTGGGAGGTCACGAACCGGGGCTTGCTTGCAAGTAGCCGGACCATTGCCTGAAATTCGGTTTGAAGGTGAGCCCAGGCAGACCGATCACTTCATCCGGATCGTAACCAATCTGTGCGGCACAGCTCGAAAGTATTAAGGAGAAGACGAAACTACACAGGAACATGCTTCCCTTGTGCGCTGTCACGTACGCGCAAAACCGGGACAGTGCTTCAATGCACCgggggaaagaaaagagaagttGCTCGCACCAGCTTTCTCAACCCTGT

Function

GO:

id name namespace
GO:0016125 sterol metabolic process biological_process
GO:1902652 secondary alcohol metabolic process biological_process
GO:0008203 cholesterol metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78590 lncRNA upstream 451060 17404385 ~ 17503263 (+) True G62781
TU78603 lncRNA upstream 520123 17433642 ~ 17434200 (+) False AMCG00020370
TU78471 lncRNA upstream 908173 17030193 ~ 17046150 (+) True G62681
TU78470 lncRNA upstream 918825 17031817 ~ 17035498 (+) True G62680
TU78429 lncRNA upstream 964744 16987319 ~ 16989579 (+) True G62654
TU78758 lncRNA downstream 25759 17981033 ~ 17983521 (+) True G62912
TU78763 lncRNA downstream 32574 17987848 ~ 18032139 (+) True G62916
TU78838 lncRNA downstream 179719 18134993 ~ 18138267 (+) True G62975
TU78859 lncRNA downstream 242305 18197579 ~ 18200101 (+) False G62989
TU78860 lncRNA downstream 242305 18197579 ~ 18200808 (+) True G62989
AMCG00020396 mRNA upstream 4264 17945158 ~ 17950059 (+) True AMCG00020396
AMCG00020394 mRNA upstream 12487 17930929 ~ 17941836 (+) True AMCG00020394
AMCG00020393 mRNA upstream 27907 17917969 ~ 17926416 (+) True AMCG00020393
AMCG00020399 mRNA upstream 42183 17905597 ~ 17912140 (+) True AMCG00020399
AMCG00020387 mRNA upstream 65536 17872823 ~ 17888787 (+) True AMCG00020387
AMCG00020395 mRNA downstream 1434 17956708 ~ 17980551 (+) True AMCG00020395
AMCG00020408 mRNA downstream 104851 18060125 ~ 18065789 (+) False AMCG00020408
AMCG00020407 mRNA downstream 115346 18070620 ~ 18072051 (+) False AMCG00020407
AMCG00020406 mRNA downstream 164439 18119713 ~ 18134812 (+) True AMCG00020406
AMCG00020405 mRNA downstream 183613 18138887 ~ 18178120 (+) True AMCG00020405
TU78735 other upstream 25419 17928328 ~ 17928904 (+) True G62895
TU78611 other upstream 482454 17459160 ~ 17471869 (+) True AMCG00020371
TU78405 other upstream 1138466 16814374 ~ 16815857 (+) True G62632
TU77751 other upstream 3485023 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 4003276 13948426 ~ 13951047 (+) True AMCG00020267
TU78775 other downstream 103284 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 112513 18067787 ~ 18072043 (+) True AMCG00020407
TU78921 other downstream 377295 18332569 ~ 18334032 (+) True G63045
TU79166 other downstream 1641964 19597238 ~ 19600737 (+) False AMCG00020439
TU79182 other downstream 1676051 19631325 ~ 19636221 (+) True AMCG00020438

Expression Profile