RNA id: TU78802


Basic Information

Item Value
RNA id TU78802
length 1237
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G62951
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17968233 ~ 17969691 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCTGTGTCATGTTTGACTGAGATAAATTGTTAAAGATGAAAGCGATTTTCTCTTGGACGTTTTCTGGAGGTTCCACTATCCTTTCCGTTTGGTCTGTTGCCACCAACAGTGTGTCGATGTTCGTGGTGTTTATAGAAGGCTGAGAATGACATGGCATGAAAAATTGCTTGTTAACAAACATACCAAAGCAgcacagtgtatttcaaatgtagGACTAGTTTGCAAGCACTGTTTCCATGCACTTACGTTACAATGGCAGTCACTAAGAACACAGGACTGCACCAATTACAGCAGAACTATAATATGCAAAGGAAAAATCTGCTTCCCTCCCAAATGAATGCATAACATTACAGTGGGAGCAGGGTTTATTATGCATGCATATGACTTAAAAGTAGTAATTAAataagcacagacacacacataccccAATTTCCCTTGCGCTACCGATACTCACTGGCACATCCTTCTTGAAGCTGACTCCAGTGGGGCGGGTAATGGTAGTGGTTTTGGCAACAGTGGTTGTGGGGGGTGTAGTTACCATGGTGCTGACCGGTCCAGGGAGGGATGCCTTGGGGGGAACCTGTGCTTGGGCCTGGGCTTGTGCAAGGGCAAGGCTGCCTGGGGTGGTGATGGATCCCTGCATCTTCACAGGAGGGTCTCGTGACTGCTGTCCATACTCGATATACTGCACACACTCTTGTAAATGATGAGGGAACTGCAGAAAGTGTGCAATAGAAGCTAAATGCTGACAATACTGGGGATAGTCCTTCAGTCTGAATGCAGGaagaagaaaagattaaaaaacattctctcaaaataaaaataatgtccaAAAGGTTTAACATTCAGTAACTGACATCACAAAACACTGACAGCAGTTTAGAAGGACTGTAACAAGACCACACTAATAAATCATTCGAGGCATTCAAATATGGGGTGAAACCATACCTGTTTTTAAACCTATCTAACGCGGCAATgccaaagtaatacattttggaTCCAAAGGGTTTCCTTAAGGCTTCAAGAACATAGCGCAGGGCCAGCCCCAGGGCCATATAGGTCACTAGCCCCTTCTCGATGATCCCCCCGAAGAGGCAGGCTGTGATGTGCAGCTCCTTGTCGGGGTACTGAGGGAAGAAGCGGTACTCCTCAAACAGGTTCCTAAGCATGCAGTTGAACACTTCACGTTCCCGTTTAATGGTGGAGTCCTTGAACCTCTGCAGCATCTCCAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78718 lncRNA downstream 117120 17848158 ~ 17851113 (-) True G62880
TU78578 lncRNA downstream 597787 17364823 ~ 17370446 (-) True G62770
TU78515 lncRNA downstream 792398 17120154 ~ 17175835 (-) False G62715
TU78513 lncRNA downstream 792398 17172569 ~ 17175835 (-) True G62715
TU78464 lncRNA downstream 948681 17018790 ~ 17019552 (-) True G62675
TU78844 lncRNA upstream 167789 18137480 ~ 18138298 (-) True G62981
TU78888 lncRNA upstream 214317 18184008 ~ 18186050 (-) True G63015
TU78936 lncRNA upstream 388134 18357825 ~ 18358910 (-) True G63057
TU78976 lncRNA upstream 427776 18397467 ~ 18398731 (-) True G63092
TU78982 lncRNA upstream 466834 18436525 ~ 18436939 (-) True G63096
AMCG00020398 mRNA downstream 12307 17950334 ~ 17955926 (-) True AMCG00020398
AMCG00020397 mRNA downstream 37643 17926512 ~ 17930590 (-) True AMCG00020397
AMCG00020389 mRNA downstream 151345 17813315 ~ 17816888 (-) True AMCG00020389
AMCG00020390 mRNA downstream 157586 17805531 ~ 17810647 (-) True AMCG00020390
AMCG00020391 mRNA downstream 173734 17775984 ~ 17794499 (-) True AMCG00020391
AMCG00020400 mRNA upstream 11704 17981395 ~ 17984641 (-) True AMCG00020400
AMCG00020403 mRNA upstream 17490 17987181 ~ 18015862 (-) True AMCG00020403
AMCG00020402 mRNA upstream 59682 18029373 ~ 18039986 (-) True AMCG00020402
AMCG00020401 mRNA upstream 81142 18050833 ~ 18055929 (-) True AMCG00020401
AMCG00020404 mRNA upstream 101605 18071296 ~ 18079151 (-) True AMCG00020404
TU78680 other downstream 342044 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 1175066 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 1692660 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 1713114 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 1848080 16118989 ~ 16120153 (-) True G62409
TU78823 other upstream 24853 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 36477 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 67351 18037042 ~ 18039960 (-) False G62961
TU79413 other upstream 3342511 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 4574151 22543842 ~ 22544689 (-) True G63679

Expression Profile