RNA id: TU78822


Basic Information

Item Value
RNA id TU78822
length 602
RNA type TUCP
GC content 0.52
exon number 4
gene id G62961
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18006168 ~ 18039960 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACAGTGAAGGAGGAGTCAGTGCTCCCTATATACAGGCTTGTGGAGTGCAGTGCAATAACAAACACAGGCACAATGCTGGGCTCTCTGTTTCTCCTGTGGGCTGGGCTTCTCCTCCTCTATTTCCTGTGGAAGACACGGAGGCCCAAGAATTTTCCACCTGGTCCTCAGCCTTTTCCGATATTTGGGAATCAGCTTCAGCTAAACCTGAAGAACCCCATGAAAGACTTTGAAAAGCTGTCCGAGCGCTATGGGaaagtgtacagtgtgtatttCGGGGGCAGGCCGGCTGTGTTACTGCATGGTTTGCAGGCAGTGAAGGAAGCCCTGATGACTCGGGGAGTTGAATTTGCTGGGAGGCCCCAGGGCCTGCTGGTCAACCACGTTACTGAGAATAAAGGTTTGGTTATAGTcaactatggtcccagctggaAGGAGCAGCGGCGGTTCGCTCTGAGCACTCTGAGGAACTTTGGCTTGGGAAAGCTGTCCATGGAGGAGAGGATCCTGGAGGAGACTTCACATCTCAGCTCGTACATAGAGAAGAGTGCAGGACAGTCCTTGGACCCTCAAACGTTGTTCCACAATGCCTTCTCCAATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78802 lncRNA downstream 67351 17968233 ~ 17969691 (-) True G62951
TU78718 lncRNA downstream 185929 17848158 ~ 17851113 (-) True G62880
TU78578 lncRNA downstream 666596 17364823 ~ 17370446 (-) True G62770
TU78515 lncRNA downstream 861207 17120154 ~ 17175835 (-) False G62715
TU78844 lncRNA upstream 97520 18137480 ~ 18138298 (-) True G62981
TU78888 lncRNA upstream 144048 18184008 ~ 18186050 (-) True G63015
TU78936 lncRNA upstream 317865 18357825 ~ 18358910 (-) True G63057
TU78976 lncRNA upstream 357507 18397467 ~ 18398731 (-) True G63092
TU78982 lncRNA upstream 396565 18436525 ~ 18436939 (-) True G63096
AMCG00020403 mRNA downstream 21180 17987181 ~ 18015862 (-) True AMCG00020403
AMCG00020400 mRNA downstream 52401 17981395 ~ 17984641 (-) True AMCG00020400
AMCG00020398 mRNA downstream 81116 17950334 ~ 17955926 (-) True AMCG00020398
AMCG00020397 mRNA downstream 106452 17926512 ~ 17930590 (-) True AMCG00020397
AMCG00020389 mRNA downstream 220154 17813315 ~ 17816888 (-) True AMCG00020389
AMCG00020401 mRNA upstream 10873 18050833 ~ 18055929 (-) True AMCG00020401
AMCG00020404 mRNA upstream 31336 18071296 ~ 18079151 (-) True AMCG00020404
AMCG00020411 mRNA upstream 49139 18089099 ~ 18092504 (-) True AMCG00020411
AMCG00020410 mRNA upstream 64228 18104188 ~ 18110182 (-) True AMCG00020410
AMCG00020409 mRNA upstream 131660 18171620 ~ 18175979 (-) True AMCG00020409
TU78814 other downstream 21182 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 40025 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 410853 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 1243875 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 1761469 16272451 ~ 16275573 (-) True G62421
TU79413 other upstream 3272242 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 4503882 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 5114732 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 6636787 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 7071150 25111110 ~ 25112551 (-) True AMCG00020581

Expression Profile