RNA id: TU78838


Basic Information

Item Value
RNA id TU78838
length 3275
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G62975
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18134993 ~ 18138267 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tggaaaataaggaaaatacaaaacaaatccatcaaGTTTTTTTTACGTTCAGCTTGGTTGAAGTTGAGCTCAGTCCATAGTGAAATTGAGAACCCGTACATATTTTTTCACTGGTGGTGATATTGTGAATGAAATCATTTTGCATTGTATAACCATAGGCATGTGCAAAGCTGGGTTTATAATGTGAAATGGACAGATTGTTGTAGGTCAATGGAAGGGAACTATCTGAATTGCTAATGGTTGCTTCTGGCTCTGTTCTCCTGAGTGGCTTTGGGAAGGCCCCACTGTAAAATGGCTCTTAGAATAAGCGAACACCAAAAATGCTGGTCCCATATATTatgtgtatataacatcatgtgcTATTGCTTAGGCATGACCAGTCAACTGGAATGCAATAGTGGCAGCAACCAAAAGGCACAAGAGGTGGGGGGAGGGTATGTgaccacagacacagagagtaGGTGTCCTGACAGCAGACCCTGTGAGAGGAATGATAGCATTGGATGAAAGGGGGTGGGCTGACAAACAGAGTGAAGTGCTCTTGGGTCTGTAAAGCGAATAGAAGACTTGCTAATGATCAGGGTCCGAGCTATCCTGCCAGCCATCACTCACCCTGTCGTAGCATGTAGCATGTTAAGATCCGTCCTCTCTTCAGAAGCCCTGAGAGACTGATATTCGTGCCATTAAACTCAAACTTGAAATGTTCTCCTCGCCTGTCAAAAGCTTTCCAGTTCAATTGGGCCTTTGTCACTTTTTCTTGCTGCAGTACTGCAACCAGTGAATACATTCTCccctatcacacacacacacacacacacacgcatcaCATGTCCTGAATTCAGCCCTCTTCCTTGCATAAAGGAagctgtgtgtatatagataaGTGCATACATGGTTATGGTGCATGTGTGCTAAATATATTATGTTCCTGTACAGTATGCTCAGAAATCTTGCTGAATACTTTTTGGCCATGCTGCTGCAAACCAATTATAGTGAccaaaatctgttttgtttttttccagtcaaCATCACTACTTTTTAATGTTGATATTCTTTCATAAACTGATTTTCTCCAGATTGTTAATTGAcaaaaaagagaacagaaacTCTGAGCTACAGCACAATAGATTAATCCAACAGATTGGCATACATccctttttcaatttcaaattttaCCTTAAGACTTGTCATAGAAAATAATTTCTATGGTGACACTATGTGCACTTATGGTTTGTGCAGTGACTgtaaagagaggaaaaaaaagttaaattggtaatgtttattttatgtataacaGCAAATTGGAAGTTTAGCATGTTTAGACCCCTGTTAGTTATGTGGgaagcaatatatatttgtgtacatatattttcatctttttgcaagcctatttttattttacctttatcATTCAAAGCACTATAGTTTCTAGTTgccatgtctgtttttgaaaagacTGTGAGTTATGTGACAGAAATTGTGCCAAATAGAAGTGTAGCAGACAGTGTTGATTCTTTTTTGTTCATGTCATGCTACTCATTTTGTGACGTGGGGGTGGGTGACAGAGCCAAACAAGGCTGTCTGCCCAGCCTTCAAAAGAGTTTGCTTTAATGGTACAGACAGAAGGTCAGAGTTGTTCAGGGAAGGGACCTGAACTCAATTCCATTTGGTTAGAAGGGCGCGATAACCAAGCCGAGTGAGTTGGAGACCCAGCTGAAAGGGGTTTCGTTCCTTTAAGCCTGTCCGGTTAGCCATTTGCCACTATATTACATGTGCCCTTATATTTCTTTACTTCCAATGTCAGGGTTGCATCTGTGATGtgggaatatttttttattttagcccGTAGGCTTCTAAAATCCTATCTAAAAGTCCCTCTCCATACAgaatactatttttatttttttaaacatatcatTATCTCTCTCATTATCACAGGGaacaaaattataaatctgAATGAGCACCCAAGGGGGATCCCAGTTTGCGATGTTTCATTAGGCTTTTTCTAATCTCTTGGATTCCTGTTGGTAAATCAGCCAGGCTGGTTTACCAGTACAGTGATGCATATTATAAGCTGAGAACTGTGTGTAATGTATCAAccgttttgatttgttttcctttatattttcctttatatcTTGTGGTCCACCTGTGCAACCTCTGTCTAGCATTAGAGCAAGTCGGATTGCTAGACTGACACTTGTTTATTCCTTCAATATACTGCTGTGCCTAAGTGTGGAGCCATTCTCTCCAGTGCACTTCAGTGTTCAGCGCCCATCTTGCCAGCCaactgcattgcattgaaaacaaacttgtACTTGTAAATGTCTGGTATActgtacatgtgttttgtttgtgtttgaaccAATTACACCTTATACTTCATAGACTGCTATATTTCTGGAAGCAAAACTTgaacaaacagttttttttttttgttgggtGCTGGGAAGGGTGACAGGTTGTCTTGTGGGGTagaactgccttttttttttttctttgtcttaaTCAGTAAgacatttttgatttgttttttcaaagttttCTGTATATACTGCCTAATGTATGCTTAATTTCCAAGTCAGGTTTAtccgttttaaaaacaatttgttcaaatgactttgtgtgtgtgtgtgtgagagagagagtgagagtgtgagtgtctgCATACAGAAGTGGTCTTGACTGTCTTGTGAGGGAGTATTAATAAGGTGTTCTCATGAAATATCAATCCCTTGAGAGTcctaaagtatttttaattgcacCTACCTGCTTCTCAGTTGCCGTAgtcctaattaaaaaaaactaggTTCATGATTGTTTCTGTAAATACTACTGTATCATCCGTTTACTATTTTGGCTAGTATccctttttttaagtgtgtgtgtggtaccCATCCATGGTTATCATGCctatgtgcattttaaacaccTAGGTGAATTcatacttttttgtgtttatgccaTTTAATAAGATACTGTtctgtttatatacagtaagcatttatttttatatttgaggaatatacagcatatataaataacttcCATAGGTAGCACCAAGTCATCTCAATATAGCACTTTACAAAAGCAAACCAGCTACACCTCCAGCACTGGTGGGGTACAGTCAGTACACTGAAGCCTTCAGTGTCCAgggaaatcttttttttgttttatgtttttgtttattcttcaaAGGTGAGTTTGTAGAGGCTAAagtatgtaaattaattttgtaacaAACTGGTTCGCTACGGCTATAGTTATTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78763 lncRNA upstream 102854 17987848 ~ 18032139 (+) True G62916
TU78758 lncRNA upstream 151472 17981033 ~ 17983521 (+) True G62912
TU78749 lncRNA upstream 179719 17954323 ~ 17955274 (+) True G62909
TU78590 lncRNA upstream 631730 17404385 ~ 17503263 (+) True G62781
TU78603 lncRNA upstream 700793 17433642 ~ 17434200 (+) False AMCG00020370
TU78859 lncRNA downstream 59312 18197579 ~ 18200101 (+) False G62989
TU78860 lncRNA downstream 59312 18197579 ~ 18200808 (+) True G62989
TU78861 lncRNA downstream 63577 18201844 ~ 18202070 (+) True G62990
TU78862 lncRNA downstream 66693 18204960 ~ 18205970 (+) True G62991
TU78863 lncRNA downstream 70144 18208411 ~ 18208650 (+) True G62992
AMCG00020406 mRNA upstream 181 18119713 ~ 18134812 (+) True AMCG00020406
AMCG00020407 mRNA upstream 62942 18070620 ~ 18072051 (+) False AMCG00020407
AMCG00020408 mRNA upstream 69204 18060125 ~ 18065789 (+) False AMCG00020408
AMCG00020395 mRNA upstream 154442 17956708 ~ 17980551 (+) True AMCG00020395
AMCG00020396 mRNA upstream 184934 17945158 ~ 17950059 (+) True AMCG00020396
AMCG00020405 mRNA downstream 620 18138887 ~ 18178120 (+) True AMCG00020405
AMCG00020412 mRNA downstream 43809 18182076 ~ 18186048 (+) True AMCG00020412
AMCG00020413 mRNA downstream 48932 18187199 ~ 18195630 (+) True AMCG00020413
AMCG00020415 mRNA downstream 200170 18338437 ~ 18358845 (+) True AMCG00020415
AMCG00020420 mRNA downstream 243876 18382143 ~ 18389911 (+) True AMCG00020420
TU78779 other upstream 62950 18067787 ~ 18072043 (+) True AMCG00020407
TU78775 other upstream 73129 18058558 ~ 18061864 (+) True AMCG00020408
TU78735 other upstream 206089 17928328 ~ 17928904 (+) True G62895
TU78611 other upstream 663124 17459160 ~ 17471869 (+) True AMCG00020371
TU78405 other upstream 1319136 16814374 ~ 16815857 (+) True G62632
TU78921 other downstream 194302 18332569 ~ 18334032 (+) True G63045
TU79166 other downstream 1458971 19597238 ~ 19600737 (+) False AMCG00020439
TU79182 other downstream 1493058 19631325 ~ 19636221 (+) True AMCG00020438
TU79495 other downstream 3997101 22135368 ~ 22142157 (+) True AMCG00020470
TU79558 other downstream 4220561 22358828 ~ 22372760 (+) False AMCG00020487

Expression Profile