RNA id: TU78859


Basic Information

Item Value
RNA id TU78859
length 2523
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G62989
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18197579 ~ 18200808 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCCACAGTTGACCTGCTGAGATTGAGCTGCACCTTCTATCAACCTCTCACATTGAAAGGCCACGATTTATCACATGATCAACACTAGTGGCACACGTCATTGGAAACATCACATTTCACAGGGAAATTAAAAGCAGTAAAcaagatttacatttatttcacagcttaaaaaagcaaaaaatcaATTGTTGAAAattacaagaaaagaaaatgtgtaaagtgtgagtttaaaaaaaatatacaaaagctTTTAACAAGATTGTTTTAACCATGAACATCAGATGAAAACACTGAATAGAACAAACTAACATGCAAAGCAACAGAAAATACTGGTCAagtgtagtttaaaaaaaaaaaaaaaaaggctgaaaaATTGAAAGGACTGTTGActgttgtaaaaaaacaatattcaaagaGACCATCAAAAATACAGTATCTTAAGAAACTGACAGTAATAACAGTCTAGCTTATTGTATCAACATCTAGAATGCATTCAAAACAGTCATTCAGGACAGGATTAATTTTGGATTAATCTGTGTAAAAACTGTGGAATTGTACAATTGTACGTAATCATGAAATGTTCAAGCTTTTCTGATGAGCATTCTCTACATcagtggtcctggagtaccccctgccctgctgatttttgttccaacagaggttttaattgcttaattgaatacttaattggcctaacaaagcaatataccattcaattaagtatttaagacctaggttggaacaaaaaccagtagggcagggggtactccaggactggtttgaaaactcCTGCTCTacatcaatataaatcaattaatttcagGTCAAAGGTGCCATTACTGAGGCAATTGAAATTACTTACTTTGAAAGCTATTCCATGTTGTTCAAGGACACAACATATGTTTAAACACATTGGACTGAATGGAAGCAAaagaacattgtaaaaatgatgGCTTTTCTCGTGCGATTTTTCTCCTCCATATagcaattttttaaaaatgtctctacaaaaaattaaaaagtgcatacacatAGGTACATTCTACACACAAATAAGAATCTGGCAATAGTACATAATTCCTATTTACATGCATGTAGTCAGacaataatttgaaatatttaatggtTTCACTCAgctacaatttacatttttccatgGTGGATAAAACAAACCTAAGAGAACAGATGCAAAGAACTTCATATTCCTTCTGCCAGTTTCTGATTTCTGTGCTTAGACATCTCTTGGATTGTTTCTACCTCCTGAGTTCACCTGCTCTAAACATGAATGGGCATGCAGAGCAGTCATGGTGAAATAAGGATTTTTGTCTTTACATTGAGAGTTCCTTGTTCACGTTTGGTAAAAATGTTctcacacaattaaataaaactaaacaaaattacTGCATAGGGAAGCAATTTGTTCTGTCACATTACACATGCTGCTTCTTACAAGTGTTCATATCTAAAATGATAAAAAGGGGCGAGAGTCAACCTCAATGTGCTTTATTCAGTGCTGGTCTAGTTCTGTTGAATGAATactctttaaaatgaattaataaagtaaaaaagaatataaactgaaaaacatagtaaaaaaaaaaaaaacatttaggtcTCATAGTAGACCAAATAAAGTGCATTTTGCCAATAAATACTGCATTTGGGGATCTTCCGTTCAAGATTCTTACATCGGCCTCAAACAAGTCAAAACTGAACAACCTGCATATTAcggctgtattttatttacacgcAACAGAAAGTGGCCTCTGACTTTAAAACAAATCGGCACTGAGTGCAAGTTTATAATTTGCGATTTGCATGCATTGTTAATGTCTTGATTTGGTTTAGGCcattgcaaaaaaaagaaagtacaacaggtaaaaaaaaaatatgcgGGATCTTCAGCGAGCTTGTTCTGGTCCCATCAAGGgcatcctaaaaaaaaaaatcattggaAGACAGAATTTGAGCTTCTTATCTCCGTGTTCAATCTATGCTGCGGGCGGACCTGAATTTTAACGGAGAATAACAGTGAACTCTGCTGAAGAAATCGCTCCACTGTGTCCGGCTGTTGTCACCTTGGAGAGTCACAAGGAGGAGCAGGAGTATTTAAAGGCAAGTTCATGTACTCTCTTCATAGAGTCAAAACAGCCAGACAAAATCCACAGAGAACGAAACTTCCTAAAACATCCACAGAACTcatgacaattttttttttttttttaaaagcttataGTGGAATAGAATTGGACTAATATAAATGAAGTCAGTTTCCCCAACCCTTGTTTCTGAGGTTAATTCATTGCTAGCGATCCAGTTTCAGAGTCAGGGTGCTGGAGGACACAGTCTGTAAAATCAATGCTAAAGCATCTATTGGCCCGTACCCAGCTGGCTGCTAGTCAAAGTACGACCTCGGGGATGGACATGGAATTCCACAGGCTGCACTGCTAGGTGGAAAGTTTTGCTTTTCctaggaagagagagaaataaagttTAGATTGTTTTCACCCCCTTCCCCCATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78838 lncRNA upstream 59312 18134993 ~ 18138267 (+) True G62975
TU78763 lncRNA upstream 165440 17987848 ~ 18032139 (+) True G62916
TU78758 lncRNA upstream 214058 17981033 ~ 17983521 (+) True G62912
TU78749 lncRNA upstream 242305 17954323 ~ 17955274 (+) True G62909
TU78590 lncRNA upstream 694316 17404385 ~ 17503263 (+) True G62781
TU78861 lncRNA downstream 1743 18201844 ~ 18202070 (+) True G62990
TU78862 lncRNA downstream 4859 18204960 ~ 18205970 (+) True G62991
TU78863 lncRNA downstream 8310 18208411 ~ 18208650 (+) True G62992
TU78864 lncRNA downstream 10037 18210138 ~ 18210377 (+) True G62993
TU78865 lncRNA downstream 10668 18210769 ~ 18211029 (+) True G62994
AMCG00020413 mRNA upstream 1949 18187199 ~ 18195630 (+) True AMCG00020413
AMCG00020412 mRNA upstream 11531 18182076 ~ 18186048 (+) True AMCG00020412
AMCG00020405 mRNA upstream 19459 18138887 ~ 18178120 (+) True AMCG00020405
AMCG00020406 mRNA upstream 62767 18119713 ~ 18134812 (+) True AMCG00020406
AMCG00020407 mRNA upstream 125528 18070620 ~ 18072051 (+) False AMCG00020407
AMCG00020415 mRNA downstream 138336 18338437 ~ 18358845 (+) True AMCG00020415
AMCG00020420 mRNA downstream 182042 18382143 ~ 18389911 (+) True AMCG00020420
AMCG00020419 mRNA downstream 195756 18395857 ~ 18398731 (+) True AMCG00020419
AMCG00020425 mRNA downstream 310362 18510463 ~ 18522856 (+) True AMCG00020425
AMCG00020426 mRNA downstream 330077 18530178 ~ 18536093 (+) True AMCG00020426
TU78779 other upstream 125536 18067787 ~ 18072043 (+) True AMCG00020407
TU78775 other upstream 135715 18058558 ~ 18061864 (+) True AMCG00020408
TU78735 other upstream 268675 17928328 ~ 17928904 (+) True G62895
TU78611 other upstream 725710 17459160 ~ 17471869 (+) True AMCG00020371
TU78405 other upstream 1381722 16814374 ~ 16815857 (+) True G62632
TU78921 other downstream 132468 18332569 ~ 18334032 (+) True G63045
TU79166 other downstream 1397137 19597238 ~ 19600737 (+) False AMCG00020439
TU79182 other downstream 1431224 19631325 ~ 19636221 (+) True AMCG00020438
TU79495 other downstream 3935267 22135368 ~ 22142157 (+) True AMCG00020470
TU79558 other downstream 4158727 22358828 ~ 22372760 (+) False AMCG00020487

Expression Profile