RNA id: TU78861



Basic Information


Item Value
RNA id TU78861
length 227
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G62990
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18201844 ~ 18202070 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CACCATCATTAAAGTCTTGCTGTCTCCGCTGAGAGAGTCCTGCAGCAGGTAGGTGAGGCGGGAGTTTCTGAAGGGGATGTGCGCATGTTTGGAGCGCAGGGCGTAGATGACGTCGCCTAGTGCTGCCAGGGACTTGTTGATGCACTGGGCCTCCCGCAACCGGCTGCCCTCTGCGCCCGACTTGGCAATTCGCTCCGAGCCTGCCAAGTCGACCAGATTCAGCTTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU78860 lncRNA upstream 1036 18197579 ~ 18200808 (+) True G62989
TU78859 lncRNA upstream 1743 18197579 ~ 18200101 (+) False G62989
TU78838 lncRNA upstream 63577 18134993 ~ 18138267 (+) True G62975
TU78763 lncRNA upstream 169705 17987848 ~ 18032139 (+) True G62916
TU78758 lncRNA upstream 218323 17981033 ~ 17983521 (+) True G62912
TU78862 lncRNA downstream 2890 18204960 ~ 18205970 (+) True G62991
TU78863 lncRNA downstream 6341 18208411 ~ 18208650 (+) True G62992
TU78864 lncRNA downstream 8068 18210138 ~ 18210377 (+) True G62993
TU78865 lncRNA downstream 8699 18210769 ~ 18211029 (+) True G62994
TU78938 lncRNA downstream 158205 18360275 ~ 18360493 (+) True G63058
AMCG00020413 mRNA upstream 6214 18187199 ~ 18195630 (+) True AMCG00020413
AMCG00020412 mRNA upstream 15796 18182076 ~ 18186048 (+) True AMCG00020412
AMCG00020405 mRNA upstream 23724 18138887 ~ 18178120 (+) True AMCG00020405
AMCG00020406 mRNA upstream 67032 18119713 ~ 18134812 (+) True AMCG00020406
AMCG00020407 mRNA upstream 129793 18070620 ~ 18072051 (+) False AMCG00020407
AMCG00020415 mRNA downstream 136367 18338437 ~ 18358845 (+) True AMCG00020415
AMCG00020420 mRNA downstream 180073 18382143 ~ 18389911 (+) True AMCG00020420
AMCG00020419 mRNA downstream 193787 18395857 ~ 18398731 (+) True AMCG00020419
AMCG00020425 mRNA downstream 308393 18510463 ~ 18522856 (+) True AMCG00020425
AMCG00020426 mRNA downstream 328108 18530178 ~ 18536093 (+) True AMCG00020426
TU78779 other upstream 129801 18067787 ~ 18072043 (+) True AMCG00020407
TU78775 other upstream 139980 18058558 ~ 18061864 (+) True AMCG00020408
TU78735 other upstream 272940 17928328 ~ 17928904 (+) True G62895
TU78611 other upstream 729975 17459160 ~ 17471869 (+) True AMCG00020371
TU78405 other upstream 1385987 16814374 ~ 16815857 (+) True G62632
TU78921 other downstream 130499 18332569 ~ 18334032 (+) True G63045
TU79166 other downstream 1395168 19597238 ~ 19600737 (+) False AMCG00020439
TU79182 other downstream 1429255 19631325 ~ 19636221 (+) True AMCG00020438
TU79495 other downstream 3933298 22135368 ~ 22142157 (+) True AMCG00020470
TU79558 other downstream 4156758 22358828 ~ 22372760 (+) False AMCG00020487

Expression Profile