RNA id: TU78888


Basic Information

Item Value
RNA id TU78888
length 1659
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G63015
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18184008 ~ 18186050 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttaaatgaaatagttTATTTCCTATTTACATTAAGACATTACATGTGAGAAGGTAGTGTTGAGGAAGACCCACATTACACATGCAATTCCTTTTGTTCCAGATCCTGTGAGTGAAATCTGCAGAAAAAGAGGCACAGACCTTATACAACTGAGAACAGCAAAGCTCAGTAACATTGGGCAAACAATATTTCCTGATAGATTCATACAACAGGCAGATTTGTAATATACAGCCTTAATTAAATATCACTATGGAGTAGAGGATTcatattaccaaaaaaaaagtatttgtgaCACGTGAGTGATCATGAACAATCATTTTGTCTGTTAAGTCAACCTCTGATCTTATGATAAAGACTCTGAGTGAAGTATAATTTAAGACATTCATAGATACTGCTGCACATCATTTCATGggtaatgcatgcatttaaaagaaaaataaatgtacactgATGCAGCTGCCACCAGTTTGCTTTTCCCCCATTTTTTTCACCTACTCATTTAGCTATAGTCCTAAATAGTGTTTTAAAGCACTATAATCCACATATTCTGAAAGGTTAACATTCAACAttaaaaatcaatgttaaaactcaagtttattattataattattaatatcaagatacatttatttggatAATTAATAAGACAAGGGGTTCTCAAGGTACTGGCAACACATTTGTCAACATGGAGAATCAGTGAAGAAGTAAATACTGCACATCCACTGAGTCCACCGATTGAAAGCCATGATCATTAGTCTGGATTCATACAGATTAGTCACATTGAAAATACCTTGTGTTTGTAGTGATAATGAACAGTGGCATTTAATCTAGCCCTGTGTACCAAGAACAGGCTTGTTCGTCTGTAATATTTCTTGATATTTCCTCTCTttcttaaaaattatatttcttatttctatagattcagtgtttttaaattgatacaCATTGCTCTGGTTCACTCAGGCACAGTGATAAAAGTGAAGGAGACCGGCAAGACAAGCAGCAGGCATTAAAGTCAGGAGGAACAGCTTTCATAGGGTGCTATACAGAGTTCaagtaattcaatattttgaaatggattAGCTTTATCTACAAAAGCTACCTTGAGTAAAGATGATGCATGAGATATTGGAAACATGATTTAATTAGCTTCCCTGGATTGTACAACTGTTTCAATATACGTTTTCATAACAGTTAAGTTGTCTGATTGTTTGTTAAAACCACAGCAGCGTCCAACACTGTCTGTATGAAAGTAGTAGGACACCTTCACAGGTGCAGAGGAAGGTCTTACATAGTATGAAACCTCAGAGTTAAACAGACACTGACAACAAATGTTGCAAAGTTCATGATTTGGGTTTCTGTAaactcagaaaaacaaaacctcgtgctgaataatttaaaacaaactgcaacatctacacacatatatagatgcatttatataaaaaaaaaaaaatcataatccaAAATTAGAATCTTTTCATTTGTCGTCGTTCCTGTCTCCTCTGCTTCTTGTCGTTCACTTCCTCGTTGGCAGTGGGGGTCTCGGCTGTGAACCAGGGGCCCAGGAAATTCACCCACAGCAGGTAGATTGCCCTCGTTGGTgcctgcagcagcacaAGAGCCAAAGATACCAGAAGTACATGGATATTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78844 lncRNA downstream 45710 18137480 ~ 18138298 (-) True G62981
TU78802 lncRNA downstream 214317 17968233 ~ 17969691 (-) True G62951
TU78718 lncRNA downstream 332895 17848158 ~ 17851113 (-) True G62880
TU78578 lncRNA downstream 813562 17364823 ~ 17370446 (-) True G62770
TU78515 lncRNA downstream 1008173 17120154 ~ 17175835 (-) False G62715
TU78936 lncRNA upstream 171775 18357825 ~ 18358910 (-) True G63057
TU78976 lncRNA upstream 211417 18397467 ~ 18398731 (-) True G63092
TU78982 lncRNA upstream 250475 18436525 ~ 18436939 (-) True G63096
TU79099 lncRNA upstream 891427 19077477 ~ 19077758 (-) True G63180
TU79184 lncRNA upstream 1448244 19634294 ~ 19636243 (-) True G63257
AMCG00020409 mRNA downstream 8029 18171620 ~ 18175979 (-) True AMCG00020409
AMCG00020410 mRNA downstream 73826 18104188 ~ 18110182 (-) True AMCG00020410
AMCG00020411 mRNA downstream 91504 18089099 ~ 18092504 (-) True AMCG00020411
AMCG00020404 mRNA downstream 104857 18071296 ~ 18079151 (-) True AMCG00020404
AMCG00020401 mRNA downstream 128079 18050833 ~ 18055929 (-) True AMCG00020401
AMCG00020414 mRNA upstream 9690 18195740 ~ 18225630 (-) True AMCG00020414
AMCG00020417 mRNA upstream 49589 18235639 ~ 18247655 (-) True AMCG00020417
AMCG00020418 mRNA upstream 61607 18247657 ~ 18291605 (-) True AMCG00020418
AMCG00020416 mRNA upstream 128621 18314671 ~ 18334032 (-) True AMCG00020416
AMCG00020422 mRNA upstream 204756 18390806 ~ 18395296 (-) True AMCG00020422
TU78822 other downstream 144048 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 168148 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 186991 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 557819 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 1390841 16792866 ~ 16793167 (-) True G62618
TU79413 other upstream 3126152 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 4357792 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 4968642 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 6490697 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 6925060 25111110 ~ 25112551 (-) True AMCG00020581

Expression Profile