RNA id: TU78921


Basic Information

Item Value
RNA id TU78921
length 1442
RNA type TUCP
GC content 0.49
exon number 2
gene id G63045
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18332569 ~ 18334032 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGCCCATGCATTTGCATGAAGTGAAGTCGCGCCGCTCCCAGTGCGGTCCAAGTCATGAAACAGTTCCCCCACAATCTACAAGAAACCCACTGCCTGCAGCGGTCCAGCAGCATGCACACCGACTTGCGTCTTCAATCACACATCTGCGCGAATGTGAACATAATCATAATCACCTCAGAGTTGAACGCGTGGTCCCCAGCCCCGCACGCCCCGCCGCTGCAGACCAGGACCACCAGCAACGGCACGAGATTCAGTTTCCAGGGCGACGCGGTCCCGCACGTCCTCGAGGGTCCCATCCCGTCGCGCGCTGGCTGTGCGGGTCTGCGGCGCTGTGCGGGTCCGGCTGCGTGCGTGCCTGCGTGCGTGCGTGCTCCGTGCGTGTCGCTAAGGATGGACTTGTTTTTGCATTCACGAAATCACGGTTTAAGTTCCCTTTCCCGAAATACACACTGGAGGAAAGCGCGCTGTACTGGGGCTGAATCAAAAGCGCCTACAACTGCAGGTCATTCCCCTAATCAGTCTTCATAGTATTTCTGGCGAGCGCAGAGACTGggatttcttgtttgtttgtttgtttgtttgttttgctttgtcaaATTGTAAACATGCACTTTTCCTTTTTGGGAGCTCCTGGTATAGGCATCTCTGTTTTTGTTCCCTTGCTTTTTTCTGTATTCAGGTCCAGTCCTACATGAGTCCCAGGAGAGAGCTCCAAAATAGCCCAGTGAGCCGCTGTACCCTAGCCCAGCTTTTCTAGGAGAAGGGCTGAAAAGCCAGCGCGTTGTGCCAGATCTTTATTGGCAATTTCCCTGCCAGTGCTGATCTGAAAACCAATGAAGCACCAGGTTGATTGCACCCTTCCCAATGACCCACGTTACAATTATAGAAGCCcccaacaaacaaaagaaatatataataatctaaTTTAGCAACTGTTTTAGGCAATCAACACTCTTGCCCCGAGACAAATGAGTTGCTTCGTTTTATTATACTCATTTGCAGAAATGTCACGCCGCAAATAAAGAAATTAGCCTAGCAATTACTGTACCTACGGTATAATAAAGGTGGCCAACGGGAAACAACACAACACGACGGCTGAAATGACAGTAACTAGAGAACTGGTGGAAGCGTTGAGCAGATACGGTCGTGTGTCCATTCAAAGAAGAGTCCACAACATTAACAGAAAGCTCTCACAACGTCCCCGGTTGCCAGAATAATGACGCCTGCCTTTGTATTGCAGCCTCGCTTATAAAGATTTAATGTgatggtgtgtgttttttttttcttgcccgTTAAAATCCAGGTTTTCTTTCAATTTTCCAGGACTGTATTCACTTGTGTGCGCTGCTTTTTGGAGCTCCCCCGGGCTGATGTTAATACTCTTTCAGGCAGACAGACGCGCTGTTGGCTTGCCGACTCCAAGTGAGCTCTTGGGTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78865 lncRNA upstream 121540 18210769 ~ 18211029 (+) True G62994
TU78864 lncRNA upstream 122192 18210138 ~ 18210377 (+) True G62993
TU78863 lncRNA upstream 123919 18208411 ~ 18208650 (+) True G62992
TU78862 lncRNA upstream 126599 18204960 ~ 18205970 (+) True G62991
TU78861 lncRNA upstream 130499 18201844 ~ 18202070 (+) True G62990
TU78938 lncRNA downstream 26243 18360275 ~ 18360493 (+) True G63058
TU78951 lncRNA downstream 59034 18393066 ~ 18393306 (+) True G63068
TU78952 lncRNA downstream 60069 18394101 ~ 18394306 (+) True G63069
TU78983 lncRNA downstream 104170 18438202 ~ 18440919 (+) True G63097
TU79125 lncRNA downstream 948926 19282958 ~ 19283173 (+) True G63203
AMCG00020413 mRNA upstream 136939 18187199 ~ 18195630 (+) True AMCG00020413
AMCG00020412 mRNA upstream 146521 18182076 ~ 18186048 (+) True AMCG00020412
AMCG00020405 mRNA upstream 154449 18138887 ~ 18178120 (+) True AMCG00020405
AMCG00020406 mRNA upstream 197757 18119713 ~ 18134812 (+) True AMCG00020406
AMCG00020407 mRNA upstream 260518 18070620 ~ 18072051 (+) False AMCG00020407
AMCG00020415 mRNA downstream 4405 18338437 ~ 18358845 (+) True AMCG00020415
AMCG00020420 mRNA downstream 48111 18382143 ~ 18389911 (+) True AMCG00020420
AMCG00020419 mRNA downstream 61825 18395857 ~ 18398731 (+) True AMCG00020419
AMCG00020425 mRNA downstream 176431 18510463 ~ 18522856 (+) True AMCG00020425
AMCG00020426 mRNA downstream 196146 18530178 ~ 18536093 (+) True AMCG00020426
TU78779 other upstream 260526 18067787 ~ 18072043 (+) True AMCG00020407
TU78775 other upstream 270705 18058558 ~ 18061864 (+) True AMCG00020408
TU78735 other upstream 403665 17928328 ~ 17928904 (+) True G62895
TU78611 other upstream 860700 17459160 ~ 17471869 (+) True AMCG00020371
TU78405 other upstream 1516712 16814374 ~ 16815857 (+) True G62632
TU79166 other downstream 1263206 19597238 ~ 19600737 (+) False AMCG00020439
TU79182 other downstream 1297293 19631325 ~ 19636221 (+) True AMCG00020438
TU79495 other downstream 3801336 22135368 ~ 22142157 (+) True AMCG00020470
TU79558 other downstream 4024796 22358828 ~ 22372760 (+) False AMCG00020487
TU79808 other downstream 4736379 23070411 ~ 23074945 (+) True G63786

Expression Profile