RNA id: TU78936


Basic Information

Item Value
RNA id TU78936
length 845
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G63057
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18357825 ~ 18358910 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAGGCTTCTGTATcacactatatttaaaaaaaacattgagcaCTCTGTACAGCTCATGTACtgaacaatgtttatttattgaacaatGCAATTATGTAtctgcttgcttgtttgtttgtttacaggtGTGTAGACCACAAAAGTACATCTGTCACAATAGTTGTGAATAGAAATAGTTAaattttagtttattaaatctaaaaacaacaaatagaaGGTATCTGCCCCAGCCCACCAATAAGAtgtcttattttaatacaataatactgaAATGCTCAATGTATAAACAAtattgctactactactactgctactactaaaaTAATAGTACTAAACTTAAATTGTAACTGTACATCAAACCCTTGCAATtcaaattttcattttcattttcaattgcaGTAAGAAACATTGTCATGGGGCAGGGGGACAAGCCTGACCCACAGCCTAGAAGAAGCCGGGGAAGAATCGCTGAGCCAGGTTGCCAAGCCATAAGATCCTGTCAGGTCCCCGAGCTTTGGGTGGCCATGGTGGCGGAACCTCGACTGGCTCTCTGCTTCGAAAGGAAGTacctcagaaaaataaaaaaaACCTTGTAGTGAATTGAGGATGGTGAAGAGATAGATGCCTGTTAGCTCCAGGGGCCCAAATGAGAAGAAGGCCAGGCCCCAGGTTGTGCCCAGTAGGAAGGTGATGCCCAGCACAGTGCCTACATCCTGACAGGCACTGCGATTCTCCCCGGAGACCTTGTTGGACCTCATGGACATTATCTTCTTCACCGTGATGCTCAGCATGACCAGGTTAAACAGACACACCAGGAACACCAAACTCAGGATTGTCACATTC

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78888 lncRNA downstream 171775 18184008 ~ 18186050 (-) True G63015
TU78844 lncRNA downstream 219527 18137480 ~ 18138298 (-) True G62981
TU78802 lncRNA downstream 388134 17968233 ~ 17969691 (-) True G62951
TU78718 lncRNA downstream 506712 17848158 ~ 17851113 (-) True G62880
TU78578 lncRNA downstream 987379 17364823 ~ 17370446 (-) True G62770
TU78976 lncRNA upstream 38557 18397467 ~ 18398731 (-) True G63092
TU78982 lncRNA upstream 77615 18436525 ~ 18436939 (-) True G63096
TU79099 lncRNA upstream 718567 19077477 ~ 19077758 (-) True G63180
TU79184 lncRNA upstream 1275384 19634294 ~ 19636243 (-) True G63257
TU79277 lncRNA upstream 1897012 20255922 ~ 20256399 (-) True G63346
AMCG00020416 mRNA downstream 23793 18314671 ~ 18334032 (-) True AMCG00020416
AMCG00020418 mRNA downstream 66220 18247657 ~ 18291605 (-) True AMCG00020418
AMCG00020417 mRNA downstream 110170 18235639 ~ 18247655 (-) True AMCG00020417
AMCG00020414 mRNA downstream 132195 18195740 ~ 18225630 (-) True AMCG00020414
AMCG00020409 mRNA downstream 181846 18171620 ~ 18175979 (-) True AMCG00020409
AMCG00020422 mRNA upstream 31896 18390806 ~ 18395296 (-) True AMCG00020422
AMCG00020424 mRNA upstream 39924 18398834 ~ 18415770 (-) True AMCG00020424
AMCG00020421 mRNA upstream 60272 18419182 ~ 18431255 (-) True AMCG00020421
AMCG00020423 mRNA upstream 79294 18438204 ~ 18454657 (-) True AMCG00020423
AMCG00020434 mRNA upstream 515992 18874902 ~ 18901561 (-) True AMCG00020434
TU78822 other downstream 317865 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 341965 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 360808 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 731636 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 1564658 16792866 ~ 16793167 (-) True G62618
TU79413 other upstream 2953292 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 4184932 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 4795782 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 6317837 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 6752200 25111110 ~ 25112551 (-) True AMCG00020581

Expression Profile