RNA id: TU78982


Basic Information

Item Value
RNA id TU78982
length 415
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G63096
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18436525 ~ 18436939 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aggtgaggaatcagcccagaactacacgggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacacactacgccgtgaaggactgaaatcctgcagcgcccgcaaggctcccctgctcaagaaagcacatgtacaggcccgtctgaagtttgccaacatctgaatgattcagaggagaactgagtgaaagtgttgtggtcagatgagaccaaaatcgagctctttggcatcaattCAACTCGccatgtttggaggaggaggaatgaccccaagaacaccatccccaccgtcaaacatggaggtggaaacattatgcttttggggggacaggacaactgcaccgcatcaaagggacgatggacggggtcATGtgccgtcaaatcttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78976 lncRNA downstream 37794 18397467 ~ 18398731 (-) True G63092
TU78936 lncRNA downstream 77615 18357825 ~ 18358910 (-) True G63057
TU78888 lncRNA downstream 250475 18184008 ~ 18186050 (-) True G63015
TU78844 lncRNA downstream 298227 18137480 ~ 18138298 (-) True G62981
TU78802 lncRNA downstream 466834 17968233 ~ 17969691 (-) True G62951
TU79099 lncRNA upstream 640538 19077477 ~ 19077758 (-) True G63180
TU79184 lncRNA upstream 1197355 19634294 ~ 19636243 (-) True G63257
TU79277 lncRNA upstream 1818983 20255922 ~ 20256399 (-) True G63346
TU79287 lncRNA upstream 1851764 20288703 ~ 20299843 (-) False AMCG00020446
TU79396 lncRNA upstream 2646323 21083262 ~ 21083461 (-) True G63447
AMCG00020421 mRNA downstream 5270 18419182 ~ 18431255 (-) True AMCG00020421
AMCG00020424 mRNA downstream 20755 18398834 ~ 18415770 (-) True AMCG00020424
AMCG00020422 mRNA downstream 41229 18390806 ~ 18395296 (-) True AMCG00020422
AMCG00020416 mRNA downstream 102493 18314671 ~ 18334032 (-) True AMCG00020416
AMCG00020418 mRNA downstream 144920 18247657 ~ 18291605 (-) True AMCG00020418
AMCG00020423 mRNA upstream 1265 18438204 ~ 18454657 (-) True AMCG00020423
AMCG00020434 mRNA upstream 437963 18874902 ~ 18901561 (-) True AMCG00020434
AMCG00020433 mRNA upstream 472039 18908978 ~ 18915511 (-) True AMCG00020433
AMCG00020437 mRNA upstream 877856 19314795 ~ 19316145 (-) True AMCG00020437
AMCG00020435 mRNA upstream 886456 19323395 ~ 19438437 (-) True AMCG00020435
TU78822 other downstream 396565 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 420665 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 439508 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 810336 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 1643358 16792866 ~ 16793167 (-) True G62618
TU79413 other upstream 2875263 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 4106903 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 4717753 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 6239808 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 6674171 25111110 ~ 25112551 (-) True AMCG00020581

Expression Profile