RNA id: TU79131


Basic Information

Item Value
RNA id TU79131
length 1613
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G63209
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 19361872 ~ 19363484 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACCAGGCAAGTCTGGTCTCTTGATGCCACTGGTGCTGTTTGAGCTGTTTCCAAGGCCATTGAATGCCGCTAGGTTCTCCGTGCTGTAGGCCCTTAGGACAGACAGCATGTTCATCTGCTGCTCAAGATGGGCTTGTTCCGGTTTCATCACACCCGGGGGCACTCCTTGAGATGAAAGGAGATTCAAGCCCTGCCACTGTTTCTCCAGCAGTTGTGGCATAGTGGGTGCAAGTCCCTGCGAGTCCTTCGTTGCagtcccacaatgcatctggtCCCCGCTTCCATcatcgtcctcctcctcctcttcctcctcctcttcctcctcctcttcatcacTCTCACTGAGTGGTTTGTCAGTGGCAGACTCATTGCTGTGATCTGCAGCTCTGCCATCATCTTCCGACTGCTCTTGCTCCTCAAAAGTCTCCATCTCACTACACGAGACTCTGTCAGAAAGTTCATCGGTTGTGCACCTGTTAGTCAGGCTTGCAGACTTAAGATTCACTGTGTCAGTTGGCTGAATAGTTTGCTCAGTCTCATGATTAGCGCTGCTGGGACCTTGGGATCCTGATCCGCCTGAAGTTGCATAAATGCTAAACTGCTTGAAGAAATCATTCTGCATGTTACTCATATTGGTGTCCATGTGGTTTGGCCAGTTCAGACTCTTCTGTTCTCCTAAAGAATCCTTGCCTGGGTCCTGCTGGGTCATCTTCTCTACATGTGGTGTTTGTTTGGGCTCTTTGCTAGGGTGAATAGCACTGGCAACCAAACTGGCTTTGTTTGCCAATGGTACCTCCCCTAATTGTTCCTTGCTCATCCCTTTAATGTCCAAGATGCTCTCCTTACGTTTTGCTTTCCCCAGGTGGTTGGCCTGTAAGTGGAGGGCCATCAATTCCATGGATGAAGTTGTGAATGAGCAAAAAAGGCAGCCATGCCAGGCAACATTGTCTTGGATCGTAACAGACGAGCCTGGCAGAGAAGCAGAATCTGGCCTAACAGATAGATCGAGTGGTTCATACTGAGATTTCTCAGGTTTGCCTTCAGAAGGCTTGGCATCTGCTTTCTCCTCGCTGTTCTCGCCTCTCTTGGCTTTTGTTTCTATGCTTTCGCTAAAAGGCTTTTCTCTCatttccttgtcttttttcaGGGAACTCAGAACAAAACTGTCCATGAAAGCCTGTAGGGAACCTTGAAAGTTGACCCCGTTGCCCACCATGCTCTGGTAAGCTCTCCCCAGGTCAGAGAAGCTTGGCGTGCCATCTCCCGAAGCCTCCGAGCTCTTGAGATTTTCCAAGGAGTTTTCAGAGGCCATGCTAGTGCACTGTCCGTGGCGATCTCTTGAGGAGAGCATCCCTGATGCCCACTGATGGGGAAGCAGCTGCCCTCCTCTGAAGTCAACATTCGGCATTCCTTTAAAGACTCCTCTGAGGATGTCAGGTCTGATAAACATGCTGTTCTTGTTGCTGGAATGATCTTCCTTGTGTTCTTGGGAGTGGCCAGACATGGCTCCCCCACCGTTCTGACGTTCCCTGTGGTGACGCTCCAGATGATATTTCAGGGATGCCGACTGCGTACCTGCATAGTCACAGTGTGGGCATTTGTACGGCTTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79130 lncRNA upstream 32377 19326595 ~ 19329495 (+) True G63208
TU79125 lncRNA upstream 78699 19282958 ~ 19283173 (+) True G63203
TU78983 lncRNA upstream 920953 18438202 ~ 18440919 (+) True G63097
TU78952 lncRNA upstream 967566 18394101 ~ 18394306 (+) True G63069
TU78951 lncRNA upstream 968566 18393066 ~ 18393306 (+) True G63068
TU79174 lncRNA downstream 266790 19630274 ~ 19630567 (+) True G63248
TU79186 lncRNA downstream 289740 19653224 ~ 19654272 (+) True G63259
TU79242 lncRNA downstream 504301 19867785 ~ 19868282 (+) True G63313
TU79247 lncRNA downstream 833693 20197177 ~ 20197427 (+) True G63318
TU79257 lncRNA downstream 875346 20238830 ~ 20240926 (+) True G63328
AMCG00020436 mRNA upstream 188487 19169312 ~ 19173385 (+) True AMCG00020436
AMCG00020431 mRNA upstream 498599 18783271 ~ 18863273 (+) True AMCG00020431
AMCG00020432 mRNA upstream 592447 18765518 ~ 18769425 (+) True AMCG00020432
AMCG00020429 mRNA upstream 633903 18707806 ~ 18727969 (+) True AMCG00020429
AMCG00020430 mRNA upstream 681076 18671902 ~ 18680796 (+) True AMCG00020430
AMCG00020439 mRNA downstream 233719 19597203 ~ 19602324 (+) True AMCG00020439
AMCG00020438 mRNA downstream 270903 19634387 ~ 19636167 (+) False AMCG00020438
AMCG00020442 mRNA downstream 463325 19826809 ~ 19832079 (+) True AMCG00020442
AMCG00020443 mRNA downstream 872112 20235596 ~ 20237641 (+) True AMCG00020443
AMCG00020445 mRNA downstream 892293 20255777 ~ 20260661 (+) True AMCG00020445
TU78921 other upstream 1027840 18332569 ~ 18334032 (+) True G63045
TU78779 other upstream 1289829 18067787 ~ 18072043 (+) True AMCG00020407
TU78775 other upstream 1300008 18058558 ~ 18061864 (+) True AMCG00020408
TU78735 other upstream 1432968 17928328 ~ 17928904 (+) True G62895
TU78611 other upstream 1890003 17459160 ~ 17471869 (+) True AMCG00020371
TU79166 other downstream 233754 19597238 ~ 19600737 (+) False AMCG00020439
TU79182 other downstream 267841 19631325 ~ 19636221 (+) True AMCG00020438
TU79495 other downstream 2771884 22135368 ~ 22142157 (+) True AMCG00020470
TU79558 other downstream 2995344 22358828 ~ 22372760 (+) False AMCG00020487
TU79808 other downstream 3706927 23070411 ~ 23074945 (+) True G63786

Expression Profile