RNA id: TU79257


Basic Information

Item Value
RNA id TU79257
length 1960
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G63328
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 20238830 ~ 20240926 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTTCTAAAATGTATGACATTGGGTCCTAAACACACTTTATCACACAAATGCAATTCTCAACTATcaataaaagctttatttttggGTGAGTCAGGCAGTAAAACAACATGCTTAGAGTGGAGGATATATTCTTTACACTGGAGGCTGCTGACATGCAGTTATGGTATGAGTGGACTACCAGCTCCAGTCCAAAGTAAAAATGAACAAGCAACAATAGAGTTGTTGGAATATGCTCTGCTTACCAGGCAGCAGAAACACTCATGGTTTGGTACCCACGGGACTGTGGATCTGTCAATACCATGGTTCTGCGGcttgtattcctgccttgcactcTGAAATTAAACGTGTTTTCCAGGACACAGGAGTGCAGTTGTCATCTCTCTTGGGCCAGTGTATTAGCTATATTGTGTAAGGAGTCTTCCCTTTGAGTTGATACTGCACTATATCaacttttatattaatttatttatacatacacagGTGTAACGCCCACACCACTGATTAGCTATTGAAGGTCTCTAAACAAGTTTCTACATGAAGATTTCTGGATGTAAATGTTGGTAAGAAAGATACTGTACAAATGCAAGAATAGAGTAAAAGGTTAAACAAACGGCTAACCCAGCCTTTACCTTTACAAACAAGATCTCTCCCGACAAAGTATTAAAGAGCAGGCTGTTACCAGTCAGATTCAATTGATTATCAACCATACATAGATCAGTAATGCTGTTCCTACAACAACAGGTAAAGTGCAAATTACTAAAAACTATATCAGTCTTACCCTCTATAATGTTGAATAGAATATGGTTATTATAAACCAATTTTAAACCAATCCTTGAATATGCCATTCACACATATGCCATTTTTCAACATATATACGAttctaaatgtatataaaacaattatgcaTCTAGGATATAGAACATGTAATTCACATAACTTAAACATTAGCCAGactgctgcaaaataaatgtaaattgttgAAACTAATGTATGGTTAATAGcaatttattgtttaattgtgcaAATGTGATGCAGAAAAAGGTCTAGCTGGTGTATTTACTCCAGTTACAAATGGACCACACAGCTCTTACAGCACAAATCTTCTGTTCTttaccagttttttttttttccttttatggtTTTTAAGTatccatacatacatgcacTAATGTATTTTAACTTGGACAATACAGTTAGCAAACAATGTCTGCCTTAAATGAAGAATGCAATGAGATTTAATAAAGAAGTTCTCCccagaacatttatattttgcagtCGTCACTGTTCGTCACAGTAAcactaaaatgtgtatttgctgCCACCTTGGaataacaatacagtacaaGAAGGACAGAAGCAATacagaacacaaataaaaggttATTAGATCAAAACATTACCCTTCTACTTATTGGGATGAGCTTGATGGGCAAACATGTAAATCCATTACTCATGCTAGATTATGCCAGAATATCTTGGAATTAGTTTGTCATTGGCAGGGTGGGGCAGGGGATTGCAACACGTTTTTCATCTGCAGCCTTTTACTGGTGTGTTCTTAAAATGAAGGAATGCGGATGTGAGAGAAGTGCTAGTAAGTACAGTGGAAACCTTTTATTCCTGGCACCTTGTAAAGGCACGCTCTAGGAGTCTAACACTAGAGTGGCATGGCTagttcaaaagaaaagaaaaaagaaaaaaataatagatggGGCAAGGAAGGGCAGGGTTACCACTGGATGGAATAGTTTAATTAGTGCAGTTTGCCATTTCTCTTCCCTCTACAGAACCAGGCCTTCATAGATTGGCCCGTCAGCCTCAGGCGACTCTCTCCGCAGGCGCAGATGCTCCAGTGtgttgtgaaagtgtttgtttatttgctccGTTTCCTCACTTGCCTCTAGGTTTGGAAGATCTTCTCTTATCTTCTGGATGAGCTGGTTTAGGACTTGAACGGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79247 lncRNA upstream 41403 20197177 ~ 20197427 (+) True G63318
TU79242 lncRNA upstream 370548 19867785 ~ 19868282 (+) True G63313
TU79186 lncRNA upstream 584558 19653224 ~ 19654272 (+) True G63259
TU79174 lncRNA upstream 608263 19630274 ~ 19630567 (+) True G63248
TU79131 lncRNA upstream 875346 19361872 ~ 19363484 (+) True G63209
TU79265 lncRNA downstream 7906 20248832 ~ 20251957 (+) True G63334
TU79295 lncRNA downstream 70773 20311699 ~ 20313272 (+) True G63360
TU79378 lncRNA downstream 322891 20563817 ~ 20580433 (+) True G63433
TU79397 lncRNA downstream 843191 21084117 ~ 21084538 (+) True G63448
TU79426 lncRNA downstream 1398070 21638996 ~ 21639656 (+) True G63477
AMCG00020443 mRNA upstream 1189 20235596 ~ 20237641 (+) True AMCG00020443
AMCG00020442 mRNA upstream 406751 19826809 ~ 19832079 (+) True AMCG00020442
AMCG00020438 mRNA upstream 602663 19634387 ~ 19636167 (+) False AMCG00020438
AMCG00020439 mRNA upstream 636506 19597203 ~ 19602324 (+) True AMCG00020439
AMCG00020436 mRNA upstream 1065445 19169312 ~ 19173385 (+) True AMCG00020436
AMCG00020445 mRNA downstream 14851 20255777 ~ 20260661 (+) True AMCG00020445
AMCG00020444 mRNA downstream 59087 20300013 ~ 20310689 (+) True AMCG00020444
AMCG00020458 mRNA downstream 226462 20467388 ~ 20489997 (+) True AMCG00020458
AMCG00020459 mRNA downstream 260565 20501491 ~ 20526222 (+) True AMCG00020459
AMCG00020460 mRNA downstream 393940 20634866 ~ 20658252 (+) True AMCG00020460
TU79182 other upstream 602609 19631325 ~ 19636221 (+) True AMCG00020438
TU79166 other upstream 638093 19597238 ~ 19600737 (+) False AMCG00020439
TU78921 other upstream 1904798 18332569 ~ 18334032 (+) True G63045
TU78779 other upstream 2166787 18067787 ~ 18072043 (+) True AMCG00020407
TU78775 other upstream 2176966 18058558 ~ 18061864 (+) True AMCG00020408
TU79495 other downstream 1894442 22135368 ~ 22142157 (+) True AMCG00020470
TU79558 other downstream 2117902 22358828 ~ 22372760 (+) False AMCG00020487
TU79808 other downstream 2829485 23070411 ~ 23074945 (+) True G63786
TU79994 other downstream 3811063 24051989 ~ 24053877 (+) False G63939
TU79996 other downstream 3811063 24051989 ~ 24055592 (+) True G63939

Expression Profile