RNA id: TU79277


Basic Information

Item Value
RNA id TU79277
length 367
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G63346
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 20255922 ~ 20256399 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTATCTAGCGGTTGTTTCATCGACATTGCAGCCAGCTCCAAACACATAACTGTCTTGCTTATTGCTGTCGTATGGGAGGCCAGTCCGGTGCATTTGACCTGGGACAGCCGAAGATACTCCTCGGTTTTTTCAGTATTCTCGATGAAGTTATACCCAGTTTGGATGCTAACTTTTTAATCAAATCTTGCTCCATTACCAGTTTAAACGCCAAGATTAATGacagtatacaaaataaataaatacatctaacGATTGCGTTGTTGCATAAACCACCCCTGCAAAGCACACTACAAGACGTGCTGCACTTTCGCGCTAAATTTTATAAACACACCCCCCATAGTCACTCGGCCGTGTTCgtgtagtgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79184 lncRNA downstream 619679 19634294 ~ 19636243 (-) True G63257
TU79099 lncRNA downstream 1178164 19077477 ~ 19077758 (-) True G63180
TU78982 lncRNA downstream 1818983 18436525 ~ 18436939 (-) True G63096
TU78976 lncRNA downstream 1857191 18397467 ~ 18398731 (-) True G63092
TU78936 lncRNA downstream 1897012 18357825 ~ 18358910 (-) True G63057
TU79287 lncRNA upstream 32304 20288703 ~ 20299843 (-) False AMCG00020446
TU79396 lncRNA upstream 826863 21083262 ~ 21083461 (-) True G63447
TU79510 lncRNA upstream 1874603 22131002 ~ 22132737 (-) False AMCG00020471
TU79512 lncRNA upstream 1874603 22131002 ~ 22131959 (-) False AMCG00020471
TU79614 lncRNA upstream 2125965 22382364 ~ 22384918 (-) True G63628
AMCG00020447 mRNA downstream 706 20238327 ~ 20255216 (-) True AMCG00020447
AMCG00020449 mRNA downstream 29645 20215104 ~ 20226277 (-) True AMCG00020449
AMCG00020453 mRNA downstream 548715 19706484 ~ 19707207 (-) True AMCG00020453
AMCG00020448 mRNA downstream 563247 19689373 ~ 19692675 (-) True AMCG00020448
AMCG00020450 mRNA downstream 599156 19652823 ~ 19656766 (-) True AMCG00020450
AMCG00020454 mRNA upstream 6896 20263295 ~ 20276469 (-) True AMCG00020454
AMCG00020446 mRNA upstream 32171 20288570 ~ 20295692 (-) True AMCG00020446
AMCG00020452 mRNA upstream 63280 20319679 ~ 20327023 (-) True AMCG00020452
AMCG00020451 mRNA upstream 76288 20332687 ~ 20354695 (-) True AMCG00020451
AMCG00020463 mRNA upstream 106711 20363110 ~ 20366992 (-) True AMCG00020463
TU78822 other downstream 2215962 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 2240062 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 2258905 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 2629733 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 3462755 16792866 ~ 16793167 (-) True G62618
TU79413 other upstream 1055803 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 2287443 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 2898293 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 4420348 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 4854711 25111110 ~ 25112551 (-) True AMCG00020581

Expression Profile