RNA id: TU79413


Basic Information

Item Value
RNA id TU79413
length 404
RNA type TUCP
GC content 0.42
exon number 1
gene id G63464
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 21312202 ~ 21312605 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gatgagaccaaaattgagctctttggcatcaactcaactcgccgtgtttggagcaGGAGGAATGACctcaagaacaccatccccccCGTCAAACATGAAGGTTcaagttgccaaacgtcagcctcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaaacatctgacctctgtgattgccaacaagggttttgccaccaagtactaagtcgaaggggtcaaatacttatttccctcattaacatgcaaatcaatttataacttttttgaaatgcgtttttctggattttgttgttgttattctgtctctcactgttaaaatacacctaccattaaaattatagact

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79396 lncRNA downstream 228741 21083262 ~ 21083461 (-) True G63447
TU79287 lncRNA downstream 1012359 20288703 ~ 20299843 (-) False AMCG00020446
TU79277 lncRNA downstream 1055803 20255922 ~ 20256399 (-) True G63346
TU79184 lncRNA downstream 1675959 19634294 ~ 19636243 (-) True G63257
TU79099 lncRNA downstream 2234444 19077477 ~ 19077758 (-) True G63180
TU79510 lncRNA upstream 818397 22131002 ~ 22132737 (-) False AMCG00020471
TU79512 lncRNA upstream 818397 22131002 ~ 22131959 (-) False AMCG00020471
TU79614 lncRNA upstream 1069759 22382364 ~ 22384918 (-) True G63628
TU79616 lncRNA upstream 1070912 22383517 ~ 22391215 (-) True G63629
TU79624 lncRNA upstream 1102730 22415335 ~ 22419743 (-) True G63634
AMCG00020465 mRNA downstream 180091 21108986 ~ 21132111 (-) True AMCG00020465
AMCG00020464 mRNA downstream 752329 20541518 ~ 20559873 (-) True AMCG00020464
AMCG00020462 mRNA downstream 847944 20463204 ~ 20464258 (-) True AMCG00020462
AMCG00020463 mRNA downstream 945210 20363110 ~ 20366992 (-) True AMCG00020463
AMCG00020451 mRNA downstream 957507 20332687 ~ 20354695 (-) True AMCG00020451
AMCG00020466 mRNA upstream 328049 21640654 ~ 21659803 (-) True AMCG00020466
AMCG00020472 mRNA upstream 809064 22121669 ~ 22128173 (-) True AMCG00020472
AMCG00020471 mRNA upstream 818237 22130842 ~ 22131914 (-) True AMCG00020471
AMCG00020478 mRNA upstream 833188 22145793 ~ 22164159 (-) True AMCG00020478
AMCG00020476 mRNA upstream 853174 22165779 ~ 22184597 (-) True AMCG00020476
TU78822 other downstream 3272242 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 3296342 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 3315185 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 3686013 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 4519035 16792866 ~ 16793167 (-) True G62618
TU79676 other upstream 1231237 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 1842087 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 3364142 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 3798505 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 3808493 25121098 ~ 25139385 (-) False G64247

Expression Profile