RNA id: TU79624


Basic Information

Item Value
RNA id TU79624
length 3356
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G63634
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22415335 ~ 22419743 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAATTTATAGAACAGTAAGAATGCAAGACTGAGGACATACCTCTCTGTCGAGTCCAGGTGAAGCCACACTAATCGCACCAGTCTGAGAGTTGATCATAAACATGTTGTCGTTGGGCAATTTAGGATCCTGGCTGACAATGCTATACACGACCTCACCATTGTACGTCTCTGGATCATCTTTATCAATTGCCAGTACTTTCATAAACTGAGCaccttaaaacaaaactggttaTCAGTTACAGTTTAAGTCTAACCGATATCAAATTTTAGGAAAGCGATACACAAACGAATTACACACAAAATGGAAGACCATCATGGACCACGCTTTGAGAAGCACTGCTCTAAATGAAGCAAGATTATACACAATCCTTTAATAAACAGACTGTCATTTATTAACATAGCAATGCACCAGATACAATACAATTCAgtaaatacttgttttattaAGCGGTTACAAAGTGCTTGACAAATACTGGTCAGGTAGAAAATGCGGTTACTTAAGTCAACACCTTTATCACTAACCATCTGTCACTAAATTCCTTCTGTGTGGTATATAGAATACAATATTTGCGGTCACTGAAAACCAATCCTACCTGGTTGTGATCCTTCAGTAGCATTGCCCAAGAAGGTGTCCTTTATAAATTCAGGTTTGTTATCATTCTGATCAGATACAGTAATAATGAGTTCCATTGGATCCTCAGCTTTTCCTCCACCCACTGCAATAGCATGAGCCATGAGCTACAGAAAagatatacagatgggtgaacaattaaaggaaaaaccaacaaagtgtctccgtaaggtgttgggcaccacaagccgccagaacagtgtcaatgctcttggcacagattctatgagtctctggactctactggagggatgaacaccattcttccaaagatattccctcatttggtgtttagaaggtggtggtggagagcgctgtctaacacgtcggtccaaaatctcccataggtgttcaattgggttgagatctggtgactgcgaaggcgaTAGCATATGATTCATATCATTTCCAtactcaaaccattcagtgacccctcgtgccctgagGATGGGAGTAGTCTCTTCTAGGATGAAAATGCCCCCATCAGGACAGAAGTGTTTCACcttaggataaaggtgatcactcaatAACTTTAGGCACTGGTCTGCAAAGTTGTGCCTGCGAGAGGTGTCTGCTGTGCCCGCGATGGTTATTcaaaaattttaaataaactaagtTTGAgggaaaaagcacaaaaagattttaattctcaaaaacaattccaataatgcactgcaaaaattttaaaaattgttgTCTGGCACTCACTCACAAACGTGCAGTGTAGTGAGAGATCGAGCAGAGTTTCAGAATGACAGGTCTGAGAAACAGGGGCTCAAGTCCAGCAAAATAACGGTCTTTTGGTTGCagttactaaaataaaaatacatctgaagGCGTCTGCAACTTCAAAAGATCCTCTGCATGTTCACAAGTACAGATCTACGCAGGGACGCTTCCCTTTCTTTTGCCGAAGTGCCTAATTAGTCCCGACCACACCTCCTGCACCACACCTCATCAGCCTCCACGGACCACCCTTAACaacatcccccccccaccccagaccGCCAGATTCATGCCCGTGGAAAAAATATTGCGGAACActgctctaaggggacaagtggagccaaaccatgccaggaaaatgcccccccaaAGCATAGCACAGCCTCTgaaccccctcactgtaggggtcaagcagtcaggtcTGTACCGTTCTATTGGTGTCGCatacacatgcactcgcccacttgtcaagaatatagtgaaggatgactcatctgaccatatcacttttctCCACATCACTGTAGATCAGtacctatggtttttgcaccactgaactctcaaatgtgcatttgtctttgtaatgaggggtttatgcactgcagccctactataatatcccacCGTGTAGTTCTCgacagactgttcttgctgacagtctgatcacatcctgcattgacattctcagtcacctgggaaagagtcgctcttctgtttttccttgcaTATCGCAGTAATAACTATGTTCCTCCAGTcgtttattcaggtttttaaaTTTGTCACCCGGCTGTAGGTTAAAATATGATGCTGGGTTCCAAACTTAACTTAATGAACCTGAACCAAAATATGTCTTCACATAGGCTTTCTAATGttgttataaatattaattgaaatccAAAACAGAATTCGACCAGGCACATTGGAGTTAGAggttcaaatcaaaagacaacaTGTAACGTTCTGCAGTTGCACACTGGATTGCAAAagctttgcatttcatttattttcagtggaatCTCAGTTAAGCAGCTAAAATGTACTTGTCCATCACAAATAGTTTcccaataaattaatacttagTAATAGCTGCCCCAATTTTTGTGGATCAGAAAAAAAGTCACAATATCACAGACTACATTCCAAACTGAGAGACTCCACTTCTCTAAGGACATTTGACcacttcaacatttttttttttttaattttgctcgTGTACAACTCAAATTTTGCTATGCTTGTAGTATGTCAGAGCATTctctcaaattacatttttattaggtAAGTGCATCAGAAGATAAGCTGTAGCCTCCTTTTCACAAATTTCATTAAGAAATTCTCTAGGTCTGGGATGCCCCATGATATGATTTCaacaggtttttttatttttatttagtagtaGTCATAACATTCACAATTAAGTGgacatgaaatacatttctataatttAGAATATCATTGCATCACCAGAGAttgaaaatacaatcacaaCTACTAATGGGCAGTTTATTTTGTGTCCAAGGCCCTGAGATTTAACAGTTTCATTTCATTATACATGGTCTGTAGGTGGAACTGAATGTTCATAACCTGCACGGGCATGATGCAAGTCATTTGATTTAATggcaagaataaaaacattttctgaggcATCTTATTCATATGTACCTGGGACCTGAGACAATTATGTAGTACTCATCTGCACCTGGGTTGTAATAACAGGGGTCATAATCCTCATATGCCAAGTACCCCAAGTATCATTTAAGCTCTTATACAATAGTTTACACATAGGAGAAAACAAATTGGATGAACAAAGGACTGAAGAATTATACTTACAACATATTGATCCTGAGCCTCTCTGTCCAAAGGCTGGGTCACATATACAATTCCACTGTTCCTGTCGATTGTGAAAACTCCTTCAGGTGGCTCACTTGCTCCTGGTCCAGTAATGCTGTATAGAATTTGTACTTCCTTGGCATTACTAGATTTGATCTGGAATTATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79616 lncRNA downstream 24120 22383517 ~ 22391215 (-) True G63629
TU79614 lncRNA downstream 30417 22382364 ~ 22384918 (-) True G63628
TU79510 lncRNA downstream 282598 22131002 ~ 22132737 (-) False AMCG00020471
TU79512 lncRNA downstream 283376 22131002 ~ 22131959 (-) False AMCG00020471
TU79396 lncRNA downstream 1331874 21083262 ~ 21083461 (-) True G63447
TU79666 lncRNA upstream 21049 22440792 ~ 22446550 (-) True AMCG00020489
TU79677 lncRNA upstream 126025 22545768 ~ 22546057 (-) True G63680
TU79678 lncRNA upstream 129672 22549415 ~ 22549727 (-) True G63681
TU79679 lncRNA upstream 130204 22549947 ~ 22550167 (-) True G63682
TU79680 lncRNA upstream 131777 22551520 ~ 22551798 (-) True G63683
AMCG00020488 mRNA downstream 60809 22352946 ~ 22354526 (-) True AMCG00020488
AMCG00020482 mRNA downstream 90370 22321085 ~ 22324965 (-) True AMCG00020482
AMCG00020483 mRNA downstream 107860 22270714 ~ 22307475 (-) True AMCG00020483
AMCG00020477 mRNA downstream 191636 22216569 ~ 22223699 (-) True AMCG00020477
AMCG00020475 mRNA downstream 200394 22196435 ~ 22214941 (-) True AMCG00020475
AMCG00020489 mRNA upstream 24562 22444305 ~ 22466767 (-) False AMCG00020489
AMCG00020492 mRNA upstream 54550 22474293 ~ 22512944 (-) True AMCG00020492
AMCG00020493 mRNA upstream 133105 22552848 ~ 22579832 (-) True AMCG00020493
AMCG00020494 mRNA upstream 163915 22583658 ~ 22588193 (-) True AMCG00020494
AMCG00020495 mRNA upstream 182197 22601940 ~ 22616819 (-) True AMCG00020495
TU79413 other downstream 1102730 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 4375375 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 4399475 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 4418318 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 4789146 17610664 ~ 17626189 (-) True G62853
TU79676 other upstream 124099 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 734949 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 2257004 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 2691367 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 2701355 25121098 ~ 25139385 (-) False G64247

Expression Profile