RNA id: TU79676


Basic Information

Item Value
RNA id TU79676
length 848
RNA type TUCP
GC content 0.59
exon number 1
gene id G63679
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22543842 ~ 22544689 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCGTGTTTCCTCATCTTTGTGCAGGACTAGCTTCTTCCTGGCCGATTTCTTAACAGTTTCAGTGGCAGAGCCCCGGCTGGCCGCCTGATCGAGCCGAGCCCGTTTCTTGGCCGTGCTGTGGCCGGTCTTGGTGCAGAACACGTCTAAACTGAGGTCGAGCTCCGCGGGGCGGGAGCTGCGCTTCGGGGTGCGCGGGGGCCGGGCGGCGGCGCTCTGCTCCGGACTCGGGGGTGCCAGCTCAGCAGGGACGGCAATGTCATCCGAGGGGTCCTGCTTCGCTTCTCCGGCGTCCTTCGATTGCTCCTCGGCACCTGCCCGGGATCGCGTGGCTCTGGCTTTCGGGGGCGAGTGCACGGCACGCTCTGCCCCCCCCGCTCCCGCTCCCGCGGCGTCCCGGTTCTTAATTCTAGAACGTGTGCATCGAACACTGTCTCGCGTGCCTCGCAGCGCCGCGCTCTCTTCCTCCAGCGGATGGACTCCTCGCTTGGTCCTCAGCGCCCCCTCGCCCCCTGCTTTCTTACTCTGCGCAAAGTAATCGGTAACTCGAAGCTGAGACATTATGGTTGATTTCTTTCAAATCGAATGTACTTCCcctaaataaaacacttaattgCACACGTATGAAAAAATGGATTATGCAGACATTCCCCAAGCATCAGCGACCTCTGGACCgcagttttacttttttacacaGCTTCCCAAACAGGTACTATCTGCTGCCCTCCTCTCTTCCTTCTCAGTCGTTCTTTCACAATTCACGTCTGCCCACAGAAAGTGTGTGCAATAGCGCGGTGCCGTTTCTCTCCCCCGCTGCAGCCGATCGCTTCCCCCACTCCTCTCTTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79666 lncRNA downstream 97292 22440792 ~ 22446550 (-) True AMCG00020489
TU79624 lncRNA downstream 124099 22415335 ~ 22419743 (-) True G63634
TU79616 lncRNA downstream 152627 22383517 ~ 22391215 (-) True G63629
TU79614 lncRNA downstream 158924 22382364 ~ 22384918 (-) True G63628
TU79510 lncRNA downstream 411105 22131002 ~ 22132737 (-) False AMCG00020471
TU79677 lncRNA upstream 1079 22545768 ~ 22546057 (-) True G63680
TU79678 lncRNA upstream 4726 22549415 ~ 22549727 (-) True G63681
TU79679 lncRNA upstream 5258 22549947 ~ 22550167 (-) True G63682
TU79680 lncRNA upstream 6831 22551520 ~ 22551798 (-) True G63683
TU79681 lncRNA upstream 7311 22552000 ~ 22552303 (-) True G63684
AMCG00020492 mRNA downstream 30898 22474293 ~ 22512944 (-) True AMCG00020492
AMCG00020489 mRNA downstream 77075 22444305 ~ 22466767 (-) False AMCG00020489
AMCG00020488 mRNA downstream 189316 22352946 ~ 22354526 (-) True AMCG00020488
AMCG00020482 mRNA downstream 218877 22321085 ~ 22324965 (-) True AMCG00020482
AMCG00020483 mRNA downstream 236367 22270714 ~ 22307475 (-) True AMCG00020483
AMCG00020493 mRNA upstream 8159 22552848 ~ 22579832 (-) True AMCG00020493
AMCG00020494 mRNA upstream 38969 22583658 ~ 22588193 (-) True AMCG00020494
AMCG00020495 mRNA upstream 57251 22601940 ~ 22616819 (-) True AMCG00020495
AMCG00020498 mRNA upstream 233048 22777737 ~ 22789084 (-) True AMCG00020498
AMCG00020502 mRNA upstream 245764 22790453 ~ 22824939 (-) True AMCG00020502
TU79413 other downstream 1231237 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 4503882 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 4527982 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 4546825 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 4917653 17610664 ~ 17626189 (-) True G62853
TU79847 other upstream 610003 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 2132058 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 2566421 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 2576409 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 2664370 25209059 ~ 25211063 (-) True G64260

Expression Profile