RNA id: TU79827


Basic Information

Item Value
RNA id TU79827
length 420
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G63800
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23070401 ~ 23070820 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAAGCTTGGCCTGGCTACACAAGACTGGTTTAGGTTAACACTGCATGTTGtaaactgcatttgttttagaatTGTTAAATATGAGATAGTGTTGAGCTATAAGTAATAATATGCCTgcccatttttgttttcttatttgtcaAGGAAAACTGATTCTAgagtaaaattaaaactattggCCTTTGGTTAGTTTTTCAGGATACACTCTGGTTGTTCATGTTTACAAAAGAAACTAAAAGgccaaaaataattaaaaggggGGGAAACTTGAAAAGGAACACTCTGTATTTATGATAGTCATGTTGTGTGTCATGTGTTGTGAATGGTCAGTTTGGGATCCATTCTCTGTTGCTGGATTAACAGATATGTACAAATGATACTGAAAGCAGGTATAGAATGTCGAAATAAACATTAACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79818 lncRNA downstream 99 23068319 ~ 23070302 (-) True G63791
TU79826 lncRNA downstream 2201 23062058 ~ 23068200 (-) True G63799
TU79682 lncRNA downstream 517818 22552382 ~ 22552583 (-) True G63685
TU79681 lncRNA downstream 518098 22552000 ~ 22552303 (-) True G63684
TU79680 lncRNA downstream 518603 22551520 ~ 22551798 (-) True G63683
TU79863 lncRNA upstream 100988 23171808 ~ 23182107 (-) True G63829
TU79873 lncRNA upstream 123324 23194144 ~ 23194529 (-) True G63834
TU79875 lncRNA upstream 132150 23202970 ~ 23205921 (-) True G63836
TU79897 lncRNA upstream 207972 23278792 ~ 23279073 (-) True G63858
TU79973 lncRNA upstream 842042 23912862 ~ 23913221 (-) True G63921
AMCG00020510 mRNA downstream 32587 23033583 ~ 23037814 (-) True AMCG00020510
AMCG00020501 mRNA downstream 91777 22975667 ~ 22978624 (-) True AMCG00020501
AMCG00020503 mRNA downstream 125787 22938797 ~ 22944614 (-) True AMCG00020503
AMCG00020504 mRNA downstream 139409 22917372 ~ 22930992 (-) True AMCG00020504
AMCG00020502 mRNA downstream 245462 22790453 ~ 22824939 (-) True AMCG00020502
AMCG00020509 mRNA upstream 30 23070850 ~ 23086811 (-) True AMCG00020509
AMCG00020511 mRNA upstream 93617 23164437 ~ 23168767 (-) True AMCG00020511
AMCG00020516 mRNA upstream 195187 23266007 ~ 23276284 (-) True AMCG00020516
AMCG00020521 mRNA upstream 801594 23872414 ~ 23899771 (-) True AMCG00020521
AMCG00020523 mRNA upstream 848891 23919711 ~ 23923789 (-) True AMCG00020523
TU79676 other downstream 525712 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 1757796 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 5030441 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 5054541 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 5073384 17994544 ~ 17997017 (-) False AMCG00020403
TU79847 other upstream 83872 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 1605927 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 2040290 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 2050278 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 2138239 25209059 ~ 25211063 (-) True G64260

Expression Profile