RNA id: TU79847


Basic Information

Item Value
RNA id TU79847
length 7209
RNA type TUCP
GC content 0.40
exon number 1
gene id G63819
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23154692 ~ 23161900 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGTTCTTTCACAGTATAAATTTTTATTGCTACTTTGGCTGAAAAGTTAATCAAAAATACACCTTTTCTGCCCAAATCTTTTCTGTATAGCAGCATTTCAAGTGAAACTATGAACCATCGTACTCCCCCCAAAATGACAGGAGTTGAACCCAGGTTGGGGAACAACAAAAGTGCtctcatttccattttgttcttctttttcttcaaataaaacaacataaaatagcctaaactaaactaattaCATCCAATATAGAACAATCTCCAGAAGTAATATATTTAGCAGTTTTAGTCTGCAtgctaaaatataaacataaaaatattgtatatgctccatatatttaaaacaatgcctTATAAACATAACACATTAATTTTGTACAAATTAGTCACATGCtatgaaacattaaatacattaataattagaTTTGTataagaacagaaaaataattcagGTTACCTAGATGCGTGACAATATTAGGTAATAATTAAAACGGAAATTCTGTAGAAGAGAAGGATCTATAAATCCGCATGAAACAatgaagtacaaaaataaacctcAACTTTCTTGGCATACAGAGAAAATATTTAGGCAtctatagaaaaacaaaatatacagaaataagGATGAATTCAAACAATTTTTACTTTGGTCACATTATACACTTAAAACATCTCCTATATCCTTTGAGATTACCATAATCTTATGCAAATTATTCGCAGTTGCACATTAAAAGCATGTTTGTGCACTTAACTGCATGCAATTCATTCAACACAGGAGTATTCATCAGACATACTCCATATGTACAATACAGGATGAAAAATAATACtgcaattattttatctgaaaggtcaattaaaaaaaagagaaatggaaaatgataaacaaaaaacatacagtatatatgaacatatatttacaatgttcacctgtgttaaacaaaaacagttaacaAAAAATCATCAAAAAAGACTATCATTAAATCAGTAATGCATATCAAAGGTATGTGCATATTTGcatgtcacaaaatgtattccattTACATAAAATTATGGTAGTATATTCAGTCCACCTagaatatgtttacatttaaaattaaagggAGATTGTATTCCATCAATTTAAATACTTCTACATTTACCTGGTTTTCATCAAGATTTCCATCCAGTTAATGCTTAACCTGCTCCTCTACATCCAACgtagttttaatgtattaaactgCAACATCATACTACACATTACTTTGTATCTCTGTCTTGTGACTATGCAAAGTAAACTTTTTGGTACTATTAAAAGTATAGAATTAACTGTAAACATAACAGCAAATTATATTCAGCTAAggttttgcagtttattttcttgattatctaaaatgcattttggatGGTAGTTCACAACACTAATGCATATGGACCACTGCACATAAATAAGAATACAGACATGACCCCATCTTGGCGAACCATGCCCCAAACATAGGGAGACAAAATCTGAGAAAAGACCttctttatattgttattttctcaAAACAATGTTATCCGGAACAGGTAGCAGAAAAAGGTTTGCAAGATTGGCAATAAAGTGACGTGATGGCAGGACAGGGTGCTAaagcatatacacacacacgcacacacgcaaacacacacacacacacacagtcagataCCGATGTTTCGTTGCTATGCATCCTTTTTTTAACTGGAAAAAAAGTCTCCATATTTTTAGGCCACACATAGTTTCTTCagaatattatatacaaatgaGTCAAATATCTTGCATATATTGTTTGACAAATAATAACGATGATGTAGTGTTACTGCTTACTCTCTTGCATACAGTTAACCTTGGTCATCAGAAGGGATTAGGTTTATTCCACACCTTCTATCTAGCCGACTTCTGTTGTCAAGCACTTATAGAAGTAGAAATCGATACATGGGTACAAGTTGAGGACTCAACCACAAACATCAGGACTTTGTCGATTTTTAATGGCTTTCCCCTGCAAATTCTGCCAGGGACAGTGTTGACAGATCTGTGAAAGCCATTGCTGTGGTTGGTCACACTACCTGAAGATGCACTTTGAATCTACATTCTTGACCATGATGTATGCCAGGTGCACTGAGAACCCACTAGCTTCAAATGATTTCTCTCTTTTACTATCCATAAGCAGTGTAGTATTTTGATTCCTatacttacagaaaatgatCGAACGCAAGAATGAGATTTACTgacaatcatattttttaatctctctttGCCTGTAATAGTATTATTAACACAGACAACCCTGTaccaaaacagacacacacactggaaaaGCAATGGTAATATTGGCGCAAACCAACATTAAAACTAAGTTTTGATTGGCTGCTTTCTCTTAGAGAAGATTTAGCAAATCTATGTGGCTAACAAAAGCCACAACAACAATCTCAACTCAACACCTATGAGTTAAtgtgcatttatataaatacttcATATAGactattgtattgttttttttattctaatttaCAAAGTGCTTCTACAGTGTTTGATCCTTTCTGGAACAGATTTCATCAAACAGTGAATCGTCtcattgaacaaaaataaagtcaCTGTTCTCAGTCATGTCCTCTGATGGCTTGAATTACAGAATTACGCAAAACTCTTCTCACCCGGACAACAGACGTAGGAAGCCATTTTTAAAACCCAAGgatcttaaaatacaaattcatattCCAAAACTTTAACGTTTTTAAACTTAATATGAAGAACAACTAATTGATACAAACAAATCTGCTGATAAGTAAAGATTTTTCCCTTTggaacattttctttgtcttcacTATCTCGAGTATCCTAAGGACTTTTTTAACCAACAGATTAAGTGATcttaatgtgaaaatgtttaagGCCATGACAAAGGTCTCTGTGGGCTTTATAAATGGCAACCTGTATTAGTGCGGAACAGCACTGCCACACTCTCATGTTGCTACAGTAGTTTACACAGCTCAGTTTGCTGTGGCAGCCAGGAACACAAATTgaagtcattttatttaaatttaaatacaacagCATTTTCCTCCACCAAACCCCTTACCATCTTATGGTATCTGCATGTTCTAAGCCAGGgtttttgttgtggttattGTATAATTGTTACATAGTGTACCGCAAGAAAGATCATAATCTTAGCTGTTGAAACTTGTGGCatctcttcattttttattgtttatcattttgtttgcGAGATTTTGATCTAGTGTCCTGACAATGTGCAGCAAATACCACGAGAAGTTAAGGAACAGTGGGTTTTTTCTGGTATGGCACAATGATCTGGGCACAGAACACAAGCAGGGCTGTACCAGGCAGTGATGAAGACTAAGGAAAAGCCCATTGAGGACTGAGCAGCATAAAATGAGACTTTTGATAAAGAGATACACTTCATATTGTAAGACAGCAAAGGCTTCCAAACATGCTATGTATGGAAATTAATTAGTACACCCTACTACGTCTTACTAGACACCAAATGAGCCTCCATTTTAGCTTTATTCTGGAGATAAAATTCCTACCTTACAACAGGCGTGGTGAAGCAGTGTGGTGGCCACCACTTTCATGATAAACAGCTTTCTACAATGACAACATGTCTCATGGGAtttaggaggagagcagaaatgGATCCCCTTAAAAGGTGGTTTTTACATGGTTTTCTGTGTCACTGTTTTATAAGTTGCATTTTAGAATCAGTACCTGGCATTCAAAGCAGCTATTTTTCCTCCACCCACTACATGTGAGTAAACCATGTGAAACCATGCCCACTCCTAGTATCCCTGGTTTTACAGTCTGCAGTGCAGCAACTTCAAAACTCAAGGACTGAATTATGCTGCACAACTGCATATTATACATTCATGTCAAAATGGTTCTTCTCTCACTCCTGCCTGAGCTTTTCATTGAGTAATCATAAATGGCTTCACATACTGTAATATTTTGGAATGAAAACACTTCAGGGTATTATCGCATGACAAATTGCCTCAAAACATGGCGTGGAAGGGAAGTCCCTGCAGTACCACATTCTGACCAGCTGGTGTCACTGGCAACACAATCTGCTGTTCTatggcaattacatttttcagatcaCAAAgcctgttttttctctttaatgtcTGCAAATCTGCATCATATCTTTATGTTAAGATACACATATATACCATATGTATAAGACCTGCAGGTGTATATAGTGCAAACCATAACTGGCAATGGAATTTGGAATATCTATGTCACAGtatattttgctatttttttgttcttgtatacAAACCAGTGCTTGCATCTTCTCCCACTCTTtcactgttaaattaaaatgaataaattatctAGTCTACATGACATAGGCATACAGCATGGCTAAAATTGTTTTGTCAACATACATACACTTTTTACGATATACATACAGAACTAATACATCTTTCttatatcattaaaaaatatatgctcagatgtatacttttaatattatttatgctTTGAGAATATCTCAGGTTCAATATTGGCATAGAACTTCTTGTTAGTTTCATTATTGTATCTCATGATGTCTAGCTGAATATTTAAAAGCTTCTAGTGCCATGATTCAAGTACCAGAGTAAAGTTAGTATCCTATAGTTAAGCCTGCATTGCCTCATAGATAATTCCTTCAGGCTTCTCCCAGGACACACGGTATATCCATTACTTCGATTGCTAAATTGCCTAGGCAGAACAGTGCAATAAACTAGTCACATGGTCAGTATTTCAACTTTTCAGCTGTGTTCTGAAGCGACTACTTATTTTACTATTCTTCAGATATGAACATAGAGTAGGAATGCATTAAGAATTGTCCCTGGCAAACATAGCCCTTCCTCACCTCAATttggaagggagggagaggggttaACTGCAAAATTGGTTTTCTTTAGTAAATGCAgaatatttgtgtgtctgtgtcggTATATATAAACTGATCCTTTTCTAAATCCCTTTTGGTATTTTGTTTGTCTAGGTAGTTCATTTTCTCCTGCTCTGTATGTTCAGTTCAGTCAAGGTGCATTTTCCCCCCTCAGTTTTCTATTGGATTTGCAATGAAATCCCATTTTGATCTCCACCGAGCTGCAGGAGTGCTGAAGTTGTGTGGCCTCTTGCATCATCAGCTTGCCAGACCGTtttacagagacacagagacccAGAGGGCAGCACTGAGACCTTGTCAACTGGTTGGGGCCACTGTAAAGCAATGCTAACCCTCCAGGTTGTATAGCTCTCCCCTTTCTGTTTCCATGCTCACAGGGAAACCAAGGCCAGGGTGGTGATCTGTAATTATCTCTGTTTGTCTAACAGACTTGATAATCTGCGTCAGGCactttattgtttcatttttgccTTTTCACTGTAGGATTGTTATCTGATACCAGAGAGCCACAAGACACAGATTCTTCAGCTTAGGAGGAATGTACAATGACACATGAAGACGTAAAATGATTAAGTCAATTACCCAAATAAGGAATTGCAAATATACAGATATCTGTTATGTTAGTGCTATATCCTTACTCTAAAAATGAACAGTTTgccagaattattattttttctgctgcAGATATTCCAGTTTGGGCGTCTTTATGGACCCTGTCCTCAGTGACGTTTTGTGCAATTTTGCTTTCCAGTCCTGTTACATAAGACATCAAATTTATGTTCTTAAGGTAGGAAGTCTGATATTCAGACACATAGATCAGACAGAATAAATCTCTTTCCAGCCAAACAGCTGCACTGGAACAATTGTATCATGAAATATACTGAGggccaaacagaaaaaagaaaaagaaataaactgagccagaagaactcacaGATGCCAGAAGCAGCTGGACTCGTGTATGGCATGGCCTCACCCATCCCTAAATGAACAGTTCCTGACTGTGCTTGGCAGCTCTACAGTGCAGTGTCGTACACTTCCTGCTGTAATGCTGCATTGTTGTGGTCCCTGTGAGGCAgctggggtgggtgggggtggtcCCAGTCAGGGTCTGCAGTGGCGGCGGGGATGGACAGGGGTGGAAACCCAGGGTTGGGGATCTGGTTCCTCAGCTGCTCCCGGACATCCTGCTCCAAACTAGGGGGCACAACCAGCTGATCCTCAGGATCCTGTTGGGCTGGGGCGGCAAAGTAGCCCGATTTCTTTTTCGGGGCCTCTAGTGCCACCTCGATGAGATTGTGGCTGTCTTCCAGTGCCACCACTGAGCCATTGGATAGCTTCTTCCCAAAGAGGCTGGAAGTAGACGGAGATTTCTTCAGGTCCGAGATCTCCTTCCCGCACACGGAGAGGAGGCAGCCGTTAGTGGCCGACACCACCACACTGTTTTGCCGGCGCATCTTGGTTCTGAAGCCACCCATGCTGAAGTCCGGGCCCCTCTGATCTGGACCGAGCTCATGCTCATGAGGGACCTCGGGAGGCCCAGAGCGGATCTGGAAAGCACAGCAGTGGATATCCACTTCCACCTCCAGCTTACTCCCATTGGTAATGACACCCTCTAGTGGTGCTTCGTCGTCACTGTCTAGGCCGTTGTCTGACTGGTTGCTGGAGAAGGTGGCACAGGATGGCTGCCTCTGAAACAGGCCTGGGTTGTTCCCTCCGGGTCCAGGGCCTCCGATCCCACAGAGGGTGGCTGCTGGGTGGAGGCTGCAGCGACGCTCAGGTCGAGAGGCTAGACCGGACGCTGGGTGCTCGTCTGAGGCCGTGGAGCCCGCCTCGCTGCCCACCTCTGAGGCTGACATCTCGCTGTTGAACTCAGAAGCGATCCCACTGCTGGAAGAGGGGGTGGCAGGGTCACCCAGGGGTACAGAGGTGGGGTAACCTCCCACCACACTCCCTGTTCCCAACCCTCTCCCATCCGTGTTAGCCAGTGGAGGTTCACAGGTGCAGCTGTCCTCACCAATGTGAAGTGACACCACCACAGCCCCCACGTTGTCCCGGGCACCATAGCTCTGTGCCAGGGTGCAAAGCTTCTTCGCCGCAGCTCTGGGGTCTCTGACTGCCTGCACGGTGCACACAGCCTCGTGATAGGAGACCCGCTCAAACAGGGCCCTGTTCCCCAGAATCAGAAACTCATCCTGGGCACACAGGGGCTCTGTCCGTACCCAGGGTTTGGGGAGGACCCATGGAGACAGGTACGAGCAGCCCAGCAGGCGGGAGCAGCACGTGACACCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79827 lncRNA downstream 83872 23070401 ~ 23070820 (-) True G63800
TU79818 lncRNA downstream 84390 23068319 ~ 23070302 (-) True G63791
TU79826 lncRNA downstream 86492 23062058 ~ 23068200 (-) True G63799
TU79682 lncRNA downstream 602109 22552382 ~ 22552583 (-) True G63685
TU79681 lncRNA downstream 602389 22552000 ~ 22552303 (-) True G63684
TU79863 lncRNA upstream 9908 23171808 ~ 23182107 (-) True G63829
TU79873 lncRNA upstream 32244 23194144 ~ 23194529 (-) True G63834
TU79875 lncRNA upstream 41070 23202970 ~ 23205921 (-) True G63836
TU79897 lncRNA upstream 116892 23278792 ~ 23279073 (-) True G63858
TU79973 lncRNA upstream 750962 23912862 ~ 23913221 (-) True G63921
AMCG00020509 mRNA downstream 67881 23070850 ~ 23086811 (-) True AMCG00020509
AMCG00020510 mRNA downstream 116878 23033583 ~ 23037814 (-) True AMCG00020510
AMCG00020501 mRNA downstream 176068 22975667 ~ 22978624 (-) True AMCG00020501
AMCG00020503 mRNA downstream 210078 22938797 ~ 22944614 (-) True AMCG00020503
AMCG00020504 mRNA downstream 223700 22917372 ~ 22930992 (-) True AMCG00020504
AMCG00020511 mRNA upstream 2537 23164437 ~ 23168767 (-) True AMCG00020511
AMCG00020516 mRNA upstream 104107 23266007 ~ 23276284 (-) True AMCG00020516
AMCG00020521 mRNA upstream 710514 23872414 ~ 23899771 (-) True AMCG00020521
AMCG00020523 mRNA upstream 757811 23919711 ~ 23923789 (-) True AMCG00020523
AMCG00020524 mRNA upstream 819460 23981360 ~ 23982883 (-) True AMCG00020524
TU79676 other downstream 610003 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 1842087 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 5114732 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 5138832 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 5157675 17994544 ~ 17997017 (-) False AMCG00020403
TU80215 other upstream 1514847 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 1949210 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 1959198 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 2047159 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 2080269 25242169 ~ 25242511 (-) True G64271

Expression Profile