RNA id: TU79897


Basic Information

Item Value
RNA id TU79897
length 282
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G63858
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23278792 ~ 23279073 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctccccacgtgcatcaatgagccttggccgcccatgaccctgtcgccggttcaccgcttttccttccttggaccacttttgataggtactgaccactgcagaccgggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatttggcccttgtcaaagtcgctcagatccttacgcttgcccatttttcctgcttctaacacatcaatttgaggacaaaatgtgcacttgctgcctaatatatcccacccactgac

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79875 lncRNA downstream 72871 23202970 ~ 23205921 (-) True G63836
TU79873 lncRNA downstream 84263 23194144 ~ 23194529 (-) True G63834
TU79863 lncRNA downstream 96685 23171808 ~ 23182107 (-) True G63829
TU79827 lncRNA downstream 207972 23070401 ~ 23070820 (-) True G63800
TU79818 lncRNA downstream 208490 23068319 ~ 23070302 (-) True G63791
TU79973 lncRNA upstream 633789 23912862 ~ 23913221 (-) True G63921
TU80090 lncRNA upstream 953643 24232716 ~ 24233398 (-) True G64012
TU80091 lncRNA upstream 954569 24233642 ~ 24235127 (-) True G64013
TU80111 lncRNA upstream 1025411 24304484 ~ 24304935 (-) True G64028
TU80220 lncRNA upstream 1406451 24685524 ~ 24687760 (-) True G64120
AMCG00020516 mRNA downstream 2508 23266007 ~ 23276284 (-) True AMCG00020516
AMCG00020511 mRNA downstream 110025 23164437 ~ 23168767 (-) True AMCG00020511
AMCG00020509 mRNA downstream 191981 23070850 ~ 23086811 (-) True AMCG00020509
AMCG00020510 mRNA downstream 240978 23033583 ~ 23037814 (-) True AMCG00020510
AMCG00020501 mRNA downstream 300168 22975667 ~ 22978624 (-) True AMCG00020501
AMCG00020521 mRNA upstream 593341 23872414 ~ 23899771 (-) True AMCG00020521
AMCG00020523 mRNA upstream 640638 23919711 ~ 23923789 (-) True AMCG00020523
AMCG00020524 mRNA upstream 702287 23981360 ~ 23982883 (-) True AMCG00020524
AMCG00020525 mRNA upstream 715315 23994388 ~ 24015767 (-) True AMCG00020525
AMCG00020527 mRNA upstream 772949 24052022 ~ 24055568 (-) True AMCG00020527
TU79847 other downstream 116892 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 734103 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 1966187 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 5238832 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 5262932 18006168 ~ 18015860 (-) True G62961
TU80215 other upstream 1397674 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 1832037 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 1842025 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 1929986 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 1963096 25242169 ~ 25242511 (-) True G64271

Expression Profile