RNA id: TU80091


Basic Information

Item Value
RNA id TU80091
length 1406
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G64013
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24233642 ~ 24235127 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACTTTagtcttttattattaaaatatacatccaCCTACAAATCTGCAGCTCTCTCTATAAAAATGATCACATCTGTGTTGGCAAAATACATCAACtcaaaaacatgtacaaatgaCCATACACTTAAAACACTTCCATAGTTTTAGTTTTCTGCATCAGGACAAACAATACCTATATTTCAACCTGACAGTCTCCTTCTAATGAAGgtcaaaatgtcattatttggCCAGATGTAGATTTCAAATTTGGAATGGTAAACTGTCcttgtttattaaatgtttgaaaatttaattataatgaataaggAAGAATTGTCACAGCATTTGAGAGATTTTATTGTCTCCCTGATACAGAATGGGAAATCATGGAAGAACAACATACAGGCTAAGCactcttcttttgtttttactggtAATGGTCCATACTGGAGGATACAGTCATTGCACCCTGCTGAAAAAGGAAGTTCCACTCATTTCAGAATAAGAACCATTAATAACCACCCCTAGACATAAAATAGTCAGCTTGTCAACCACTTCAAGTGTAATTCCATTAATCTTAGTGTAATTCTTacatcttCATATTAATCTGAATTTTTTCTTTGGCAAATAATTgttggttattattatataatttggtATAGACGGTACCACTCCTGACTTTCTACACAACTTGGACTGCTGGTTTTACAGGCTGAACTTAGTCTTCGCTCTAATGCTGCTGTGTGCGTGTTTTGCAATTCAGAATTTGTGAGTCACTATCAGACCTGTCAGAAGGATGCAGCAGctcacaaataataatataaacttgaacatttaaataatctcaTTATGAAGCAACTGTCCACAAATATCTAAAATCATATAGTTGTTACAAtcagaaacatatatatttatacatatattattttgtaagtccTGCCTTACAATGCTTACAACTCCAGTTTACAAATGAAACCAAATAACTGTAATGATGAAAGCCTTCCAGATTTGAATTATTCTTGTTTTCAGGGTTTACATGTACTGCTGTGATCTTCATTACTTTCTCCATTATTTGCCTTCATTTTCTGTCCTTTGTCCATGATCTACTTGCCAGGCAGGTAATTTCATCATAATCAGAACAATTGTCTTGGTCCTATTGTTTGGGAACAGCAGTAAATATCCTCAGTCCATGCATTGCTTGGATCTCATCTTTGAGCGCCTacaaaaagaaggaaagatGCAATTTCACACAGCAGTGTGGGCCATTGAGTTGTACATGTCTCAGAAGAAACACTGCCACAAAGACAACTTTTCATTAACTTAACATTTCTATGTTGACCAAACACTTGtaagttaatttaatacaatagtGTACTGACAACAAATACTgatattacaaatgaaaataaatgttgttcaAATGAAG

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0022900 electron transport chain biological_process
GO:0006518 peptide metabolic process biological_process
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko03010 Ribosome
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80090 lncRNA downstream 244 24232716 ~ 24233398 (-) True G64012
TU79973 lncRNA downstream 320421 23912862 ~ 23913221 (-) True G63921
TU79897 lncRNA downstream 954569 23278792 ~ 23279073 (-) True G63858
TU79875 lncRNA downstream 1027721 23202970 ~ 23205921 (-) True G63836
TU79873 lncRNA downstream 1039113 23194144 ~ 23194529 (-) True G63834
TU80111 lncRNA upstream 69357 24304484 ~ 24304935 (-) True G64028
TU80220 lncRNA upstream 450397 24685524 ~ 24687760 (-) True G64120
TU80224 lncRNA upstream 458515 24693642 ~ 24695563 (-) False AMCG00020559
TU80226 lncRNA upstream 466006 24701133 ~ 24701336 (-) True G64126
TU80247 lncRNA upstream 518755 24753882 ~ 24756305 (-) False AMCG00020560
AMCG00020541 mRNA downstream 36682 24164670 ~ 24196960 (-) True AMCG00020541
AMCG00020539 mRNA downstream 112904 24091734 ~ 24120738 (-) True AMCG00020539
AMCG00020540 mRNA downstream 148632 24074873 ~ 24085010 (-) True AMCG00020540
AMCG00020526 mRNA downstream 165133 24062892 ~ 24068509 (-) True AMCG00020526
AMCG00020527 mRNA downstream 178074 24052022 ~ 24055568 (-) True AMCG00020527
AMCG00020542 mRNA upstream 1001 24236128 ~ 24242643 (-) True AMCG00020542
AMCG00020538 mRNA upstream 73115 24308242 ~ 24328823 (-) True AMCG00020538
AMCG00020544 mRNA upstream 116354 24351481 ~ 24370043 (-) True AMCG00020544
AMCG00020545 mRNA upstream 166043 24401170 ~ 24401799 (-) True AMCG00020545
AMCG00020546 mRNA upstream 243374 24478501 ~ 24508437 (-) True AMCG00020546
TU79847 other downstream 1071742 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 1688953 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 2921037 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 6193682 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 6217782 18006168 ~ 18015860 (-) True G62961
TU80215 other upstream 441620 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 875983 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 885971 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 973932 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 1007042 25242169 ~ 25242511 (-) True G64271

Expression Profile