RNA id: TU80111


Basic Information

Item Value
RNA id TU80111
length 452
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G64028
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24304484 ~ 24304935 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGAAACCCAGATGAAGagtctgagctgaagctgggaACTCCTCCTCTATTTTTAGCACTACCATTGACATGCAGAGCTTTAGATGAAAGTTGCTTTAAATGTGTTACCGCTTTGTCTGGCTCGGGGGGCTTTCCTCGATCGCGATGGTTGTCCAGACCCTCGGTTCGGTAGGACCGTGCTGAGAACCAGAAGGAAAAGTAAAGCTGTCCGAGCCATGCTTTTTAGCTCCTGCTCAATCGAAACGTTGAAACTCACTTTATTTCACTCAATAGCCCATGATAACGTTTGCATAACTCACTAAATATGGGCTGACTGTATGTCCATTCAGGGACCCAATGTCATTGGCTGGCAGCATGTGTAACTTTTTTGGGagaattaattgaaatgcttCTGGGGTGACTGAACACAGAGAGCCTGCTGTTTTTAAGTCTCACTCCCTTCCATGCTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80091 lncRNA downstream 69357 24233642 ~ 24235127 (-) True G64013
TU80090 lncRNA downstream 71086 24232716 ~ 24233398 (-) True G64012
TU79973 lncRNA downstream 391263 23912862 ~ 23913221 (-) True G63921
TU79897 lncRNA downstream 1025411 23278792 ~ 23279073 (-) True G63858
TU79875 lncRNA downstream 1098563 23202970 ~ 23205921 (-) True G63836
TU80220 lncRNA upstream 380589 24685524 ~ 24687760 (-) True G64120
TU80224 lncRNA upstream 388707 24693642 ~ 24695563 (-) False AMCG00020559
TU80226 lncRNA upstream 396198 24701133 ~ 24701336 (-) True G64126
TU80247 lncRNA upstream 448947 24753882 ~ 24756305 (-) False AMCG00020560
TU80273 lncRNA upstream 550001 24854936 ~ 24856624 (-) True G64170
AMCG00020542 mRNA downstream 61841 24236128 ~ 24242643 (-) True AMCG00020542
AMCG00020541 mRNA downstream 107524 24164670 ~ 24196960 (-) True AMCG00020541
AMCG00020539 mRNA downstream 183746 24091734 ~ 24120738 (-) True AMCG00020539
AMCG00020540 mRNA downstream 219474 24074873 ~ 24085010 (-) True AMCG00020540
AMCG00020526 mRNA downstream 235975 24062892 ~ 24068509 (-) True AMCG00020526
AMCG00020538 mRNA upstream 3307 24308242 ~ 24328823 (-) True AMCG00020538
AMCG00020544 mRNA upstream 46546 24351481 ~ 24370043 (-) True AMCG00020544
AMCG00020545 mRNA upstream 96235 24401170 ~ 24401799 (-) True AMCG00020545
AMCG00020546 mRNA upstream 173566 24478501 ~ 24508437 (-) True AMCG00020546
AMCG00020550 mRNA upstream 221167 24526102 ~ 24531462 (-) True AMCG00020550
TU79847 other downstream 1142584 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 1759795 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 2991879 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 6264524 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 6288624 18006168 ~ 18015860 (-) True G62961
TU80215 other upstream 371812 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 806175 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 816163 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 904124 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 937234 25242169 ~ 25242511 (-) True G64271

Expression Profile