RNA id: TU80292


Basic Information

Item Value
RNA id TU80292
length 913
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G64186
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24945298 ~ 24946210 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCTCACCTACCAGGCAGTGTTCGGGTAGCCTTATTCACATATTCAAGTGTCTGGGGTGCACATAGGCTTGTGTTCATTTGTgtcataaacacaaataatcagACTTTGAAGACATAGTAAAAATGCTACTTTTTTACTTCACAGAGAATTTTATTACGAAATACATTCGCATTTTATGGTACAAATATTTCTAGTTGCAAATGATAAGGTATTATTTTGCAATAGTTCATGATAATAACAATAGGTACATGTAAATTCCCAGGGAATTGTATTCATGATTTTCTATGTCATATTACTTAACAATTGTGTTTAGCCTATTACCATGACAAACTTCTTAGACAGCAGTATttgctaaaaaaagaaaaagtttcaATATTCAGGTTAATAATTCTatccacatttttttaagaagaacTGGAATCCaatatctgtacattttaattcatatatttttttaaccatgactgaatttttttttagactcaaataaaactgaaattttgAACAACCAGACAATGACAACTTAAATTCCCAGTCTTTGATGACAGTTggaatgaacagaaaaaaactctTGACAAACATCAAATATTCAACATAAAGCTGAAAGCTCATAGTTTTCGTCTAATGACGTCCAAGAGTATCAGACAAAAAGAGGCAGATAGACTCTGGCCACAGAGATCCCTTTATGAGGTAATTTTTAACAAAGGGtaataaggaaaaataaatatcagatgGAGACTGTGGATGGATAACTGCTGTGGATAACATCCCAGATGCTACTTATTCAATCAACCCATTTGACCAGGTCTGTTGTTATGCATTCtgtcattaattaattgctgTCTAATGGTTTCTAAACTTGCTGTCCACATGAATGTAAAAAACATGTGTATTAATATACAGTTGCACCAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80273 lncRNA downstream 88674 24854936 ~ 24856624 (-) True G64170
TU80247 lncRNA downstream 188993 24753882 ~ 24756305 (-) False AMCG00020560
TU80226 lncRNA downstream 243962 24701133 ~ 24701336 (-) True G64126
TU80224 lncRNA downstream 249735 24693642 ~ 24695563 (-) False AMCG00020559
TU80220 lncRNA downstream 257538 24685524 ~ 24687760 (-) True G64120
TU80324 lncRNA upstream 55137 25001347 ~ 25001657 (-) True G64213
TU80329 lncRNA upstream 105994 25052204 ~ 25052452 (-) True G64218
TU80332 lncRNA upstream 117926 25064136 ~ 25064342 (-) True G64221
TU80354 lncRNA upstream 147821 25094031 ~ 25094326 (-) True G64235
TU80357 lncRNA upstream 153827 25100037 ~ 25101087 (-) True G64238
AMCG00020566 mRNA downstream 98870 24843010 ~ 24846428 (-) True AMCG00020566
AMCG00020564 mRNA downstream 124237 24814766 ~ 24821061 (-) True AMCG00020564
AMCG00020565 mRNA downstream 144515 24791942 ~ 24800783 (-) True AMCG00020565
AMCG00020560 mRNA downstream 168889 24756126 ~ 24776409 (-) True AMCG00020560
AMCG00020559 mRNA downstream 246351 24691893 ~ 24698947 (-) True AMCG00020559
AMCG00020575 mRNA upstream 1011 24947221 ~ 24950873 (-) True AMCG00020575
AMCG00020574 mRNA upstream 26539 24972749 ~ 25001128 (-) True AMCG00020574
AMCG00020581 mRNA upstream 164901 25111111 ~ 25112487 (-) False AMCG00020581
AMCG00020589 mRNA upstream 326383 25272593 ~ 25284209 (-) True AMCG00020589
AMCG00020590 mRNA upstream 343292 25289502 ~ 25302972 (-) True AMCG00020590
TU80215 other downstream 267488 24676747 ~ 24677810 (-) False AMCG00020561
TU79847 other downstream 1783398 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 2400609 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 3632693 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 6905338 18037042 ~ 18039960 (-) False G62961
TU80345 other upstream 164900 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 174888 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 262849 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 295959 25242169 ~ 25242511 (-) True G64271
TU80414 other upstream 328331 25274541 ~ 25276417 (-) False AMCG00020589

Expression Profile