RNA id: TU80354


Basic Information

Item Value
RNA id TU80354
length 296
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G64235
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25094031 ~ 25094326 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTCTGAACTGCTTTTATTCATCCACCTGGACCCCGGATCGCACAACCCTTTCTTGTCACAAACACAAGATTTAGTCATGTGTGGGAAGTGATGAGGCAACTTTTGAGTTTACAGCAATTATATTGCAATCTCTATATTTAGAACATTGTACATAATTTGGAAGTGTtggtatacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttctccactgacaatgaaatgaccagtctataattttaatggtaggtgtattttaacagtgaaagacagaataacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80332 lncRNA downstream 29689 25064136 ~ 25064342 (-) True G64221
TU80329 lncRNA downstream 41579 25052204 ~ 25052452 (-) True G64218
TU80324 lncRNA downstream 92374 25001347 ~ 25001657 (-) True G64213
TU80292 lncRNA downstream 147821 24945298 ~ 24946210 (-) True G64186
TU80273 lncRNA downstream 237407 24854936 ~ 24856624 (-) True G64170
TU80357 lncRNA upstream 5711 25100037 ~ 25101087 (-) True G64238
TU80346 lncRNA upstream 16784 25111110 ~ 25119596 (-) False AMCG00020581
TU80368 lncRNA upstream 42106 25136432 ~ 25139385 (-) True G64247
TU80380 lncRNA upstream 108798 25203124 ~ 25216693 (-) True G64258
TU80404 lncRNA upstream 167600 25261926 ~ 25264235 (-) True G64274
AMCG00020574 mRNA downstream 92903 24972749 ~ 25001128 (-) True AMCG00020574
AMCG00020575 mRNA downstream 143158 24947221 ~ 24950873 (-) True AMCG00020575
AMCG00020566 mRNA downstream 247603 24843010 ~ 24846428 (-) True AMCG00020566
AMCG00020564 mRNA downstream 272970 24814766 ~ 24821061 (-) True AMCG00020564
AMCG00020565 mRNA downstream 293248 24791942 ~ 24800783 (-) True AMCG00020565
AMCG00020581 mRNA upstream 16785 25111111 ~ 25112487 (-) False AMCG00020581
AMCG00020589 mRNA upstream 178267 25272593 ~ 25284209 (-) True AMCG00020589
AMCG00020590 mRNA upstream 195176 25289502 ~ 25302972 (-) True AMCG00020590
AMCG00020592 mRNA upstream 231467 25325793 ~ 25329845 (-) True AMCG00020592
AMCG00020591 mRNA upstream 236747 25331073 ~ 25348318 (-) True AMCG00020591
TU80215 other downstream 416221 24676747 ~ 24677810 (-) False AMCG00020561
TU79847 other downstream 1932131 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 2549342 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 3781426 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 7054071 18037042 ~ 18039960 (-) False G62961
TU80345 other upstream 16784 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 26772 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 114733 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 147843 25242169 ~ 25242511 (-) True G64271
TU80414 other upstream 180215 25274541 ~ 25276417 (-) False AMCG00020589

Expression Profile