RNA id: TU80357


Basic Information

Item Value
RNA id TU80357
length 499
lncRNA type inter_gene
GC content 0.64
exon number 5
gene id G64238
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25100037 ~ 25101087 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCCGGGAGCTGTGGGGGGTCATCGGGGGCAGCAGTCTGGGCGCCTGGACGTTCAGGGTGCTGGTGGAGAAGCTCCAGTCGATGACCACAAGTCAGGCCTCGGTGGCCTGTGCTGTACAGGACGTGGTGGCCGAGCTCAGCCTGGAGGTGCTGAGGATTCAGACGGAGGCTTTGCTGTCCAGGGcTTCGTTGTGGAGTCGCTGAAGGTCCTGCTGTCTAGAGCACAGCTGGGCGAGGTGGCTCAGGACTGGGGCCTGATCCAGGAACCAGGCTGGCAGCCCGAGGGCATCTTCCGGCTGACCAGGGCTCTGAAAACATTCACCGCCCCCGTCCTGCCGGAGGTGTTGCGGCTTCTCTGGCAGCGATACGGCAGCGCAGACCAAGGCCAGAAGATGTGCATCGCTGCCTTCTTCGCCACACTTTCACACCTGACCGACCGCTGTCTGCTGACCGAGGTCAGGAACCTGATGCTGCAGATGTGCGAGGAGCCCCTGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80354 lncRNA downstream 5711 25094031 ~ 25094326 (-) True G64235
TU80332 lncRNA downstream 35695 25064136 ~ 25064342 (-) True G64221
TU80329 lncRNA downstream 47585 25052204 ~ 25052452 (-) True G64218
TU80324 lncRNA downstream 98380 25001347 ~ 25001657 (-) True G64213
TU80292 lncRNA downstream 153827 24945298 ~ 24946210 (-) True G64186
TU80346 lncRNA upstream 10023 25111110 ~ 25119596 (-) False AMCG00020581
TU80368 lncRNA upstream 35345 25136432 ~ 25139385 (-) True G64247
TU80380 lncRNA upstream 102037 25203124 ~ 25216693 (-) True G64258
TU80404 lncRNA upstream 160839 25261926 ~ 25264235 (-) True G64274
TU80488 lncRNA upstream 360340 25461427 ~ 25461642 (-) True G64340
AMCG00020574 mRNA downstream 98909 24972749 ~ 25001128 (-) True AMCG00020574
AMCG00020575 mRNA downstream 149164 24947221 ~ 24950873 (-) True AMCG00020575
AMCG00020566 mRNA downstream 253609 24843010 ~ 24846428 (-) True AMCG00020566
AMCG00020564 mRNA downstream 278976 24814766 ~ 24821061 (-) True AMCG00020564
AMCG00020565 mRNA downstream 299254 24791942 ~ 24800783 (-) True AMCG00020565
AMCG00020581 mRNA upstream 10024 25111111 ~ 25112487 (-) False AMCG00020581
AMCG00020589 mRNA upstream 171506 25272593 ~ 25284209 (-) True AMCG00020589
AMCG00020590 mRNA upstream 188415 25289502 ~ 25302972 (-) True AMCG00020590
AMCG00020592 mRNA upstream 224706 25325793 ~ 25329845 (-) True AMCG00020592
AMCG00020591 mRNA upstream 229986 25331073 ~ 25348318 (-) True AMCG00020591
TU80215 other downstream 422227 24676747 ~ 24677810 (-) False AMCG00020561
TU79847 other downstream 1938137 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 2555348 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 3787432 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 7060077 18037042 ~ 18039960 (-) False G62961
TU80345 other upstream 10023 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 20011 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 107972 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 141082 25242169 ~ 25242511 (-) True G64271
TU80414 other upstream 173454 25274541 ~ 25276417 (-) False AMCG00020589

Expression Profile