RNA id: TU80380


Basic Information

Item Value
RNA id TU80380
length 3470
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G64258
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25203124 ~ 25216693 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atacacatatatatatatatatatatatatatatatatatatatatatctttctgtAGTTTCTTGGAGATGGGATACGTGCTGTGTGAGAGGAATGTAATGATATCTGGAGAAATGGGTAGCAAATTCCCAGGCAAcaaccacacagacagactgcaaTGCACAGGACGTGAAGTTTggttgcattttattattctggCCTATATAACGTTTCAGTGCTGGATATTGATCAGCCCCGGGTTGCCTTGTCTAAGTGTTGGTTTCACAGACTTTGATAAGCACTTCTTGGAGTACTCGGTATTATTTTAGGTAGGGTAGTTTAAGGGCCGATTCCACAGACCCAAATTAGTTCTACTCATGGactacaaaatgttattttaggtacaGTAGTCCTAggctagtgctaatcaaggtctgtgaaatcaGCCATATGAATTTGTGCTAGTTGAAATCTGTGAAACTAGCTAATTTCTTTGTGTAAACATTGATCTTTAAGTGGAAAATATTCACTTCAAGTACCCATGATACTTAATACACAATCTTAAAAGGGGAATTAAAATTTCCCAGCACTGTCAGTTTACAGATAAACCTACACTTTGTGACTATTACAGACAGGGAAGATAGTTTAGTTAACTCTAATCCAGCACCGACACTGACACTCCCAAAACAAACCCACACATAACCAACACAGGCCCAAAACGAATGGGTTATTTGTCAATGTCTGGAAAACCGGTctactttgcttttgtttaattattattattatggctttgaatagaaagaaaaaagctgtaTGAAATGACATTTTGAAGGTACTCTGCTTATATCAATCACAAACTGCTGCAAGACTTTGCATTTGCTCTGAATTCCCCTGGCTGTAGCAGTCAAGTGCCTGAACAGCACCTGCACACTGGCCCATTGCAAATATAGAAATAACAGTTTAGTAATGAAGATAAAGCTTATCAACATTCAGCCAAGGACATTTgggacatttaaaatcagaaaaatcaGTTTATAAAAAGAGAATGTTAATAATGGCTGCTCTTAAGATTTACCCAACATTATAAAAGACAGACCAATAAAAGGAAAAGTACAGAGAGCAAAGTCATATTAAACAATGTACATGGTTTAAATTCTACTAAAAGGGGAAACTTAAAACAACCTTTTACCAGCTTTACTTATCACAGCATTCCAAAGCCTTTATTGTTTGCACCTCACCCTGTAAACGAAAAGCGTCTGCCCTCCCTTTCTTTCATACATTTCACAGCTTTTCTTCAACCTACCTAGTGCCATTCAtggcttttttatttcagtatgaAAACTGCAAGTGACCCCACACTGAGGCTTAGCCTGGCTGCACCAGATGTGCCCAAAGGAAACTGTTTTTGgggaatcattttgtttgtacTATTTATCTTCAATGTGTGGTGCTAATTTCAGGCACTGTCAAAATGCTGGGAAGAATCTCACACCTACTACAAACCATACAAATAACCCCCCCCAGAAGTCTGCATATGTTCCTTCAAAATGGCATTTCCACAAGATTAGTCTGCAGAGAACTTTGGACCTTGAAAGAAAGCTAACAGTTTCCATTCCTTAACACACCAATGTTCAAATTCCTAAACTTGTGGCTCTCACACCAAATAGACTGGCAGCACTGTCTCCAAACCCTGTTGTTCAATATTGTGGCCTAACAAAATCAGTTTTGCTGAACTTTTGAAcctcaaatatatttcactctGATAATTTCAAAATCCACCACATAGAAGATCTGCTTCTATAAGGTTGGCTAGAACTGGTCGAAACCCAATGCTGAAAATAGAGCGGTTATTCCCTTCTGATTTTGCTGAGTTGGTTCCTTACTCAAAgcttaaatgtattcaattatattcCTCAGGTTTTGAGTTGCCATTACTGATACTAAAGTTATAATGCATGACTAACAATTCAATTATATAGGTTTGATGTGGGCCACTTCAGattcacattacattaatatacaattgttttataCCAATAATGCAATATGATTGATACCtttattgacatttttattttacaaattatgaaCATTTCTGCTAATAACCCAATAATTTAGATCCTTGATGGTTGCTATGGTTTCTGTGACTGGCAAGGAATACTAATCctgcaagaaagaaaattaaagctGGCGTGAtcctataataatataataaagcagCCCTGCCAAGTTGGGACCCACTTTGTTCAAAACATTTAGAAGAAAATTTGGCACAGCTATATCTGTATCCCACTGAACTCAAGTCTTGTAGAGCTCTGTACCACAGTTTCAGGCTGGAAATGTAAGGATAAAAGAGAttcaagattacatttttttttttttttaattttgtatgtttttgtactAGAGTTTTAGAGTCCACATCTCTTTTGGGTAAATTATTTTAGCTACATCACATGAAAGTCTCAGTTCTGGCAAGgacatattaaaaatgaaaatattctctccaattttgttttggtgttgcTTTGCAGCTTTGACCACAACATCAGGCCATCACATGAACTTATTTTAATCAATACTCCAGCCACATGATAGCTACCTTCAAGGCACAGAGGGGTCCAGTCTAATGATATTGACATCTGAAAATTGAATAGAAAGCAATTTTGGACTGCAGAGATACAAAGAGGAGTTCTGTCAATAATTGCAAAATAGAAAATTATGTATGTGCATTGCAAATCCCTAATCATCACATCAGAACATACGCTGATCTTCGTCACAAGTTAGTCAATcattaggaaaaaacaaaaaaacaaaaacaataacaataacaaactgACAATGTTGGCGCAGAAATCATTAAACTAGACCCCCCCAGATTGAGTGGAGCTGTGCTTTTTATGCCTCCACCTGCTGTTGTAGCCACCCACCCCCCTTTAAAAGGAACCAAATGTGGGTTAGAAACGCTGCAGATCAGTCTTTTAGCACTCAAGCCCTCGTTCGACATGGCAATATTCATATCAGACAAGGACCCGGTTCTTTCCAACTTCAGAGCCTGATGGCTACCGACTCCGTGGCACAAGCCGACTCCTCTCAGCAGTACACTTGTGTGTGTTATGGTTATGCGATTACGTATGGATTGGACGAGGCGGGTGGCGGTGTGGGGTTGGCATGAAGTGCGCTTGGCGTGAATTAACTGGCAAGCCAGCCTGCGCCAGGTCGTGCTTGTGTAAGTGTGAGGAGCTGGCAGAGCCAGAGACAGTCTGTATGTGTGGGTACTGCTCAGTCAAAGCATGTTTCTGTAATGTGTAGGTGTGTTGGAGgcctgtcagtgtgtctgtggtggGGGGAGTGGCGGGAAGTGTAGATGCTTTATGGTTAGGTACCAGCGGTGTAAAAAGgagtttgtgattttgttttataggaGATTGAGGAGGGGCAGAGCAGCGTCTCAAAAGATCTTTCccttcttcttgtttttttccatggtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80368 lncRNA downstream 63739 25136432 ~ 25139385 (-) True G64247
TU80346 lncRNA downstream 83528 25111110 ~ 25119596 (-) False AMCG00020581
TU80357 lncRNA downstream 102037 25100037 ~ 25101087 (-) True G64238
TU80354 lncRNA downstream 108798 25094031 ~ 25094326 (-) True G64235
TU80332 lncRNA downstream 138782 25064136 ~ 25064342 (-) True G64221
TU80404 lncRNA upstream 45233 25261926 ~ 25264235 (-) True G64274
TU80488 lncRNA upstream 244734 25461427 ~ 25461642 (-) True G64340
TU80489 lncRNA upstream 246847 25463540 ~ 25464116 (-) True G64341
TU80490 lncRNA upstream 248184 25464877 ~ 25465350 (-) True G64342
TU80578 lncRNA upstream 423877 25640570 ~ 25643373 (-) True G64412
AMCG00020581 mRNA downstream 90637 25111111 ~ 25112487 (-) False AMCG00020581
AMCG00020574 mRNA downstream 201996 24972749 ~ 25001128 (-) True AMCG00020574
AMCG00020575 mRNA downstream 252251 24947221 ~ 24950873 (-) True AMCG00020575
AMCG00020566 mRNA downstream 356696 24843010 ~ 24846428 (-) True AMCG00020566
AMCG00020564 mRNA downstream 382063 24814766 ~ 24821061 (-) True AMCG00020564
AMCG00020589 mRNA upstream 55900 25272593 ~ 25284209 (-) True AMCG00020589
AMCG00020590 mRNA upstream 72809 25289502 ~ 25302972 (-) True AMCG00020590
AMCG00020592 mRNA upstream 109100 25325793 ~ 25329845 (-) True AMCG00020592
AMCG00020591 mRNA upstream 114380 25331073 ~ 25348318 (-) True AMCG00020591
AMCG00020594 mRNA upstream 256562 25473255 ~ 25479762 (-) True AMCG00020594
TU80367 other downstream 63739 25121098 ~ 25139385 (-) False G64247
TU80345 other downstream 90573 25111110 ~ 25112551 (-) True AMCG00020581
TU80215 other downstream 525314 24676747 ~ 24677810 (-) False AMCG00020561
TU79847 other downstream 2041224 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 2658435 22543842 ~ 22544689 (-) True G63679
TU80401 other upstream 25476 25242169 ~ 25242511 (-) True G64271
TU80414 other upstream 57848 25274541 ~ 25276417 (-) False AMCG00020589
TU80419 other upstream 82109 25298802 ~ 25302981 (-) False AMCG00020590
TU80433 other upstream 113391 25330084 ~ 25330570 (-) True G64298
TU80656 other upstream 681735 25898428 ~ 25918630 (-) False G64470

Expression Profile