RNA id: TU80433


Basic Information

Item Value
RNA id TU80433
length 487
RNA type TUCP
GC content 0.53
exon number 1
gene id G64298
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25330084 ~ 25330570 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGCTCGTGTGGTctaatccaacagacgagctactgtagctcaaattgctgaaaaagtgaatgctggttctgatagaaaggtgtcagaacacacagtgcgtcgcagtttgttgcgtatggggctgcgtagccgcagaccagtcagggtgcccatgctgacccctgtccactgccgaaagcacctacaatgggcacgtgagcatcagaactggaccacggagcaatggaagaaggtggcctggtctgatgaatcacgagttcaaggtgttgacttggcctccaaattccccagatctcaatccaatcgagcatctgtgggatgtgctggacaaacaagtccgatccatggaggccccacctcgcaacttacaggacttaaaggatctgctgctaacgtcttggtgccagataccacagcacaccttcagaggtctagtggagtccatgcctcgacgggtcagggctgttttggtggcaaaaggggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80404 lncRNA downstream 65849 25261926 ~ 25264235 (-) True G64274
TU80380 lncRNA downstream 113391 25203124 ~ 25216693 (-) True G64258
TU80368 lncRNA downstream 190699 25136432 ~ 25139385 (-) True G64247
TU80346 lncRNA downstream 210488 25111110 ~ 25119596 (-) False AMCG00020581
TU80357 lncRNA downstream 228997 25100037 ~ 25101087 (-) True G64238
TU80488 lncRNA upstream 130857 25461427 ~ 25461642 (-) True G64340
TU80489 lncRNA upstream 132970 25463540 ~ 25464116 (-) True G64341
TU80490 lncRNA upstream 134307 25464877 ~ 25465350 (-) True G64342
TU80578 lncRNA upstream 310000 25640570 ~ 25643373 (-) True G64412
TU80594 lncRNA upstream 360838 25691408 ~ 25779211 (-) True G64418
AMCG00020592 mRNA downstream 239 25325793 ~ 25329845 (-) True AMCG00020592
AMCG00020590 mRNA downstream 27112 25289502 ~ 25302972 (-) True AMCG00020590
AMCG00020589 mRNA downstream 45875 25272593 ~ 25284209 (-) True AMCG00020589
AMCG00020581 mRNA downstream 217597 25111111 ~ 25112487 (-) False AMCG00020581
AMCG00020574 mRNA downstream 328956 24972749 ~ 25001128 (-) True AMCG00020574
AMCG00020591 mRNA upstream 503 25331073 ~ 25348318 (-) True AMCG00020591
AMCG00020594 mRNA upstream 142685 25473255 ~ 25479762 (-) True AMCG00020594
AMCG00020597 mRNA upstream 221020 25551590 ~ 25552969 (-) True AMCG00020597
AMCG00020595 mRNA upstream 235013 25565583 ~ 25574610 (-) True AMCG00020595
AMCG00020601 mRNA upstream 259444 25590014 ~ 25595268 (-) True AMCG00020601
TU80419 other downstream 27103 25298802 ~ 25302981 (-) False AMCG00020590
TU80414 other downstream 53667 25274541 ~ 25276417 (-) False AMCG00020589
TU80401 other downstream 87573 25242169 ~ 25242511 (-) True G64271
TU80385 other downstream 119021 25209059 ~ 25211063 (-) True G64260
TU80367 other downstream 190699 25121098 ~ 25139385 (-) False G64247
TU80656 other upstream 567858 25898428 ~ 25918630 (-) False G64470
TU80657 other upstream 567858 25898428 ~ 25905611 (-) True G64470
TU80934 other upstream 1915444 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 2895965 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 2994737 28325307 ~ 28328312 (-) False AMCG00020661

Expression Profile